Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1329 ATGGGTTCGGTTCCAGCAGCAGCAGAACTGAGCTTAGATATAAGACCCTCTCCATCTCCGTCTCCGTCTCCAAGCTTCGTTCCGAAGACAATAACTGAATTCCTGTGCGAGGTGTCGAGGCTGCCTCCCGCACCGGACAGGCTATCAAGGCTCAACGATTTCCTCGCCCGCCTCGAAGACGAATTCTCCAAGATCCACGCCTTCAAGCGCGAGCTCCCTCTCTCCATGCTCCTCCTCAACGATGCGATTATAGCTGTGAAGGAGGAGTCGGAGAAATGCAGGGCTCAAAGATCGCGGCCAGTGTTGGAGGAGTTCATTCCGTTGAAGAAAGAGTTGGATCAGAGCGAGGAGGAGGAGGAGGAGGAGGAACATCATCAACACAAGGTGGACAAGGAATGCAGAGATAAGAAGACCTGGATGAGTTCCGTTCAGCTCTGGAATACTACTCCCACTCTTAATAACAATGCCTATGATCATCATAAACAACAACATCATAAATTATTCGAAACCAGAACCAAGAAAAACGAGGAACAAGGGCAATCTGTGGTGGGTGAGGACCCTTTCCAATCTTGTAGGAATAGAGGTGGTGGTGGTGGTGGAAGGGCGTTTATGCCTTTCTCCACCGCCACATACTCTTCTATGCCTGTCACAGCTGTGACACTTGCAGCAACCACCAAAGAAGAGAAGGAAGACTCTGCCATCATCAATAGTGGGCTTTCTCTTCTGACCCCTGGGCCTGTAGTGAAGAGCTTGAGGGAGGGTTCTGGTTCCAGTGGATCCAGAAGCAGCTCCAACAGGGCTGTTTCCTCCTCTCCCCCAACTGCACAGCCATGTTTGCGCACGACGCCGCCCCCCCTTCAGCCCCACCACCAGCACCAGCAGCAGACTGCTAGGAAACAGAGGAGATGCTGGTCCCCTGAGTTGCACCGCCGATTCGTCAGTGCCTTGCAGAAGCTCGGTGGCTCTCAAGTGGCAACACCAAAACAAATTAGAGAACTCATGCAGGTCGATGGCCTGACCAACGATGAAGTGAAGAGCCATTTACAAAAATACCGGCTTCATACACGAAGAGTTCCATCTGCAAGTGCTAATCAGTCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCACAAGGACAACAAGATCAGTACAATGATTCCTCAAAAGGAAGCAGCTCAGGTTCTGGTTCTCCCCAGAGTCCCCTTCATTTAGGTGCAGGGTCCCGGGGAGGGACATCCCCAACTGAGGGTGACAGCATGGAAGATGATGAAGATGCAAAATCAGAGAGCTATAGCTGGAAAAGCCACACTCTCAAACAACCTGGAAAAGTTGATGTATAG 1338 0.5105 MGSVPAAAELSLDIRPSPSPSPSPSFVPKTITEFLCEVSRLPPAPDRLSRLNDFLARLEDEFSKIHAFKRELPLSMLLLNDAIIAVKEESEKCRAQRSRPVLEEFIPLKKELDQSEEEEEEEEHHQHKVDKECRDKKTWMSSVQLWNTTPTLNNNAYDHHKQQHHKLFETRTKKNEEQGQSVVGEDPFQSCRNRGGGGGGRAFMPFSTATYSSMPVTAVTLAATTKEEKEDSAIINSGLSLLTPGPVVKSLREGSGSSGSRSSSNRAVSSSPPTAQPCLRTTPPPLQPHHQHQQQTARKQRRCWSPELHRRFVSALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSASANQSVVVLGGLWMSQGQQDQYNDSSKGSSSGSGSPQSPLHLGAGSRGGTSPTEGDSMEDDEDAKSESYSWKSHTLKQPGKVDV* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1329 445 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 299 354 IPR006447 GO:0003677
Dod04g1329 445 MobiDBLite consensus disorder prediction 379 445 - -
Dod04g1329 445 Pfam Myb-like DNA-binding domain 301 352 IPR001005 -
Dod04g1329 445 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 436 IPR044787 GO:0003700|GO:0006355
Dod04g1329 445 MobiDBLite consensus disorder prediction 112 133 - -
Dod04g1329 445 Gene3D - 298 356 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 243 304 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 253 276 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 379 401 - -
Dod04g1329 445 Coils Coil 108 128 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 1 26 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 173 196 - -
Dod04g1329 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 296 356 IPR017930 -
Dod04g1329 445 SUPERFAMILY Homeodomain-like 296 357 IPR009057 -
Dod04g1329 445 PANTHER TRANSCRIPTION FACTOR HHO6 20 436 - -
Dod04g1329 445 MobiDBLite consensus disorder prediction 286 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1329 Dod-Chr4 34560187 34562356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1329 50 375 G2-like Transcription Factor Family AT2G03500 37.647 9.04e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod04g1329 Myb_DNA-binding 5.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1329 - - gmx:100812420 490.345