Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1324 ATGGGGAGAGTAAGGTGCTTCTTGGACATTAGCATAGGGGAAGAGCTTGAAGGAAGAATAGTGGTGGAGCTCTACAACGACATCGCTCCAAAAACCGCTGAGAATTTCAGAGCTCTCTGCACTGGCGAGAAGGGCATTGGTCCTAACACTGGGGTCCCCCTCCACTTCAAGGGATCATGCTTCCATCGTGTTATTAAAAGCTTTATGATCCAAGGTGGTGATATATCTGCTGGGGATGGTACTGGAGGAGAATCTATATATGGACTAAAGTTTGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTCTGGCCCTAATACAAATGGGTCTCAGTTTTTTATCACTACTACCCGAACATCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGTGTGGTCCGTTCGATTGAGCATGTTACGACTGGAGATGATGACCGCCCCATTCTTGACGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGAATCTCTAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCTAATGAAATTGACTGGTGGATGAAATCTGTTGACTCCATAAAAACTTTTGGCAATGAGTATTACAAGAAACAAGACTACAAAATGGCTCTGAGGAAGTACCGAAAGGCTTTACGCTACCTGGATGTTTGTTGGGAAAAAGACGGGATTGATGAAGAAAAAAGTTCAGGTTTGAGAAAAACAAAGTCTCAGATTTTCACAAACAGCTCTGCTTGTAAATTGAAATTAGGGGATCTCAAAGGAGCATTATTGGATACAGAATTTGCAGTGCGTGATGGAGATAACAATGCCAAAGCATTGTTCCGCCAAGGACAGGCATACATGGCACTTCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTGCTGCTGCCAGGAAGAAGATAGCTGATAGGCATGATCAAGAGAAAAAAGCATATAGCAAGATGTTCGAAAAAGGCATATAG 1095 0.4183 MGRVRCFLDISIGEELEGRIVVELYNDIAPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKSFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDDDRPILDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDESPNEIDWWMKSVDSIKTFGNEYYKKQDYKMALRKYRKALRYLDVCWEKDGIDEEKSSGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAVRDGDNNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADRHDQEKKAYSKMFEKGI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1324 364 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Dod04g1324 364 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 361 - -
Dod04g1324 364 SMART tpr_5 212 245 IPR019734 GO:0005515
Dod04g1324 364 SMART tpr_5 298 331 IPR019734 GO:0005515
Dod04g1324 364 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Dod04g1324 364 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Dod04g1324 364 Gene3D - 1 179 IPR029000 -
Dod04g1324 364 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
Dod04g1324 364 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Dod04g1324 364 SUPERFAMILY TPR-like 208 360 IPR011990 GO:0005515
Dod04g1324 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 361 - -
Dod04g1324 364 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Dod04g1324 364 CDD cyclophilin_ABH_like 5 171 - -
Dod04g1324 364 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1324 Dod-Chr4 34486666 34491828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1324 14 170 U-box Gene Family AT5G67530 45.570 1.27e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1324 K05864 - gmx:100813496 679.478