Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1318 ATGGCTCAACCAACCAACGGTGGCGATCTGAACCAGCAGGCGCAGCAGCAGCCACATCAGCAGCAGTGGGCGCAGCAGCAGCAGCCGCATCAGTACCAGCAGCAATGGATGGCCATGCAGTATCCGGCGACAGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCTTATCTCCACCACCATTACCAGCCTCCTCCGCCGCCGCCTCACCACCACCACCAGCAGTTCAAACAGCAGACCACTCCGCCGCAGCAGCAGCAGCAGTCTCAGCCGCCGCACAGCAACAATAGCCATCACCAGCAGCAGAAGCAGCAATCTGCTGTCTCCAATGATGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGACGAGAACTACCTCGTTAACTGCTTTGCTCACACCGGTGAGGTTTTATCAGCCAAGGTCATACGAAATAAGCAAACTGGTCAGTCTGAGGGATATGGGTTTGTGGAGTTTTATTCGCGACCAACAGCTGAGAAAGTGTTGCAGAACTACAATGGTACGATGATGCCAAGTACAGATCAGGCATTTCGTCTGAATTGGGCTACATTTAGTACGGGCGATAGGCGATCTGATGCTACTACTGATCTCTCTGTATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTCCAAGAGGCTTTTGCTAGCAGATATTCATCTATTAAGGGTGCTAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTATGGTTTTGTAAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACGGAAATGAATGGTGTTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAGCAACAATATTCTTCACAAGCTGTGGTGTTAGCTGGTGGACATTCATCTAACGGTGCTATGGTTCAAGGTTCCCAGTCTGAAGGAGATCTTAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATAGGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTATCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTCCAGTTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACTGTAATTGGTAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAGCTGATTCTAATGGAAACCATTATGGTGGTCAAGGTTACGGAGGCCATGGATATGCTGTAAAACAGAATCAGGAAATAGCTATGCAGCCTGCTGCCACAGTTCAAGGGGCTTCCTAA 1350 0.48 MAQPTNGGDLNQQAQQQPHQQQWAQQQQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHHYQPPPPPPHHHHQQFKQQTTPPQQQQQSQPPHSNNSHHQQQKQQSAVSNDEIRTIWLGDLHHWMDENYLVNCFAHTGEVLSAKVIRNKQTGQSEGYGFVEFYSRPTAEKVLQNYNGTMMPSTDQAFRLNWATFSTGDRRSDATTDLSVFVGDLAIDVTDAMLQEAFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSSNGAMVQGSQSEGDLNNTTIFVGGLDSDIGDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRADSNGNHYGGQGYGGHGYAVKQNQEIAMQPAATVQGAS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1318 449 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 23 448 - -
Dod04g1318 449 SUPERFAMILY RNA-binding domain, RBD 84 202 IPR035979 GO:0003676
Dod04g1318 449 SMART rrm1_1 214 288 IPR000504 GO:0003723
Dod04g1318 449 SMART rrm1_1 333 400 IPR000504 GO:0003723
Dod04g1318 449 SMART rrm1_1 121 196 IPR000504 GO:0003723
Dod04g1318 449 MobiDBLite consensus disorder prediction 66 115 - -
Dod04g1318 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 404 IPR000504 GO:0003723
Dod04g1318 449 MobiDBLite consensus disorder prediction 1 28 - -
Dod04g1318 449 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 448 - -
Dod04g1318 449 CDD RRM1_SECp43_like 121 201 - -
Dod04g1318 449 CDD RRM2_SECp43_like 212 291 - -
Dod04g1318 449 CDD RRM3_NGR1_NAM8_like 331 402 - -
Dod04g1318 449 MobiDBLite consensus disorder prediction 79 115 - -
Dod04g1318 449 SUPERFAMILY RNA-binding domain, RBD 214 406 IPR035979 GO:0003676
Dod04g1318 449 Gene3D - 314 436 IPR012677 -
Dod04g1318 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 292 IPR000504 GO:0003723
Dod04g1318 449 Gene3D - 206 306 IPR012677 -
Dod04g1318 449 Gene3D - 75 205 IPR012677 -
Dod04g1318 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 397 IPR000504 GO:0003723
Dod04g1318 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Dod04g1318 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 284 IPR000504 GO:0003723
Dod04g1318 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1318 Dod-Chr4 34413794 34419282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1318 103 411 Eukaryotic Initiation Factors Gene Family AT4G34110 28.662 1.39e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1318 - - gmx:100798089 617.076