Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1301 ATGTCTTCTCCCAACCACCGTCTCACCAAAGAGCAAGAACACTCCGTCATCGTCGCCACCCTCGCCAACGTCTTCACCGGCTCCACCTCTCTCTCTTCCCCGCCCCCATCTCAGTTGTCTCAATTTTCCTCCTCCACTGCCGCCACCTCCGGCTTCGCCTCGAGCAGCATGGACACGTGTCGCGAATGCAACATAGCGGGGTGCCTGGGGTGCAACTTCTTCAGGGAAGAGAAGAGCTGCAGCAACAGCAGCAACAAGAAGCAGAAGAGAGTGAAGAAGAAGTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTGGGCCGCCGAGATCCGCGACCCGCGAAGGGCGGCCCGCGTGTGGCTGGGCACCTTCAACACCGCCGAGGACGCAGCCATGGCTTACGACAAGGCCGCCATCGAGTTCCGTGGGCCCCGCGCCAAGCTCAATTTCCCCATGGTCGACGAGTCCCTCAGGGCCCAGCCACAATTACAGGAACAGCAACAACAGCCACAACAAACCAATGAGCAGATTGTAAAGGATGAGAATCCGAATGAGATCATGGAAACGGCGCCCTTTGGGAGCATGGAAAGCGAGTTTTGGGACAGGATTGGGGACGCTGATTTTCATCAGCTTAGGTTGATGATGGATTTTGCTGGAGATTCTTCCGATTCTGCTGCTACAGCCAACACTCTCAGTTCCTGA 702 0.5726 MSSPNHRLTKEQEHSVIVATLANVFTGSTSLSSPPPSQLSQFSSSTAATSGFASSSMDTCRECNIAGCLGCNFFREEKSCSNSSNKKQKRVKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAAMAYDKAAIEFRGPRAKLNFPMVDESLRAQPQLQEQQQQPQQTNEQIVKDENPNEIMETAPFGSMESEFWDRIGDADFHQLRLMMDFAGDSSDSAATANTLSS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1301 233 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 4 226 - -
Dod04g1301 233 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Dod04g1301 233 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Dod04g1301 233 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Dod04g1301 233 MobiDBLite consensus disorder prediction 160 180 - -
Dod04g1301 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 226 - -
Dod04g1301 233 MobiDBLite consensus disorder prediction 160 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1301 Dod-Chr4 34228279 34229349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1301 7 154 AP2-EREBP Transcription Factor Family AT4G34410 50.000 2.06e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod04g1301 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1301 - - adu:107469741 280.026