Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1289 ATGGCCACCCCAAGTAAACCAATGCCAATAATGTCTTCAGACGCCTTGGAAGAGAAGGGAAAAAATATGACTGAGTCAAATACAAGCATGCTTCAATCTCCTTTAAATCAGCAACTCCGTAGCTCCTCAGATGGCCCGGTAGCTATCCTTTGGGACATTGAAAATTGTCCTGTTCCAAGTGATGTCCGTCCTGAAGATGTGGCTGGAAATATAAGAATGGCCCTGCGGGTGCACCCAGTAATTCAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAGCTCATTGATGTTCCCAACGGGAGAAAAGATGCTGCAGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCAGCACTTCACATACTTGGTCAGCGGGGATACACTGTAATTCTTGTCATCCCCGCTGGGGTGGGTGTTTCATCTGCCCTATGCAATGCTGGGAAATTTGTCTGGGACTGGCCGAGTGTGGCTCGTGGAGAAGGATTCGTTCCCCCCTCTAAGGGTTTGCCATCCCGTGGAGGTTCAATTGAGCTTGCAGGATATCTGATGGGGTGCCATATCAATGACAACTCTGATGGACAAAATGAAGAGGAAGCAATAGTTTATAGGGGGATGTCACAGAGCTATTATAACTCGAGGGATTTCTCAATGGTGCCACAATCTCTGTCTGAATCCAACTGTGGCACATCGAAAATGACTTGCTTACCAACAACTGTGAGATCACATAGTCTTCCTTCTGGAGTGAATGATGGTTCAGGAGGACCTCTGCCTTCTAGTGACCATAACGAATGCCAGTTATGGGGGCCTACACCTGGGGATTTAAATAGTCTCGAGGGCCAGCTGGTAAGGTTACTTGAAGTTTCCGGAGGATGCCTGCCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAAATGTATGGGAGAACTCTTCACATATCCGACTATGGGGCAACGAAATTGGTCAATCTTTTCAAGAAGATGGGTGATACAATGGGAGTGGAAGGGAAAGGGCATCGTAATGTGTATCTCAGAAACTGGAAGGCAAGCCCGAGTGCTCCCCCGTTGGCTCTGGCAAAGAAAGATAAGAAAGGAAAAGGGGTCCAGGAAGAGAATGCTAATATTGTCAGTGGTGGCTGCCCTTCACATGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAACAAGATGAGAGAAGTTGCATAGGAAAGGGTATTCAGGGGAGAGCAGCCAGATGTGAAATCAATGGCCGTACGCTCGAGCAGTTCAAGCACGAGCTTCAGGAGATCCTAGTTAGCTATTCTTGTCGAATATTCCTAGGTTGTTTCGAGGCTATATACCAGCAACGGTACAAGAAACAACTGGAATATCAGAAATTTGGAGTGGACAAGTTGGAGGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTGTTGCATGAGGAACCAGCAAGCAAGAGGAAGTTCCTGGCGGCCGTGGGTGGTTAG 1593 0.4689 MATPSKPMPIMSSDALEEKGKNMTESNTSMLQSPLNQQLRSSSDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIQGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKGLPSRGGSIELAGYLMGCHINDNSDGQNEEEAIVYRGMSQSYYNSRDFSMVPQSLSESNCGTSKMTCLPTTVRSHSLPSGVNDGSGGPLPSSDHNECQLWGPTPGDLNSLEGQLVRLLEVSGGCLPLARVPAEYQKMYGRTLHISDYGATKLVNLFKKMGDTMGVEGKGHRNVYLRNWKASPSAPPLALAKKDKKGKGVQEENANIVSGGCPSHEFSDEERVVIEEQDERSCIGKGIQGRAARCEINGRTLEQFKHELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQKFGVDKLEDLFEKVSDVVVLHEEPASKRKFLAAVGG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1289 530 Pfam OST-HTH/LOTUS domain 312 378 IPR025605 -
Dod04g1289 530 Pfam OST-HTH/LOTUS domain 456 518 IPR025605 -
Dod04g1289 530 PANTHER - 35 525 - -
Dod04g1289 530 CDD LOTUS 456 518 - -
Dod04g1289 530 Gene3D - 39 192 - -
Dod04g1289 530 PANTHER LIMKAIN B LKAP 35 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
Dod04g1289 530 CDD PIN_limkain_b1_N_like 46 172 - -
Dod04g1289 530 CDD LOTUS 312 380 - -
Dod04g1289 530 Pfam NYN domain 46 186 IPR021139 GO:0004540
Dod04g1289 530 MobiDBLite consensus disorder prediction 1 41 - -
Dod04g1289 530 Gene3D - 312 382 IPR041966 -
Dod04g1289 530 Gene3D - 452 523 IPR041966 -
Dod04g1289 530 ProSiteProfiles OST-type HTH domain profile. 311 384 IPR025605 -
Dod04g1289 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Dod04g1289 530 MobiDBLite consensus disorder prediction 22 41 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1289 47 197 C2H2 Transcription Factor Family AT5G61190 43.046 2.22e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1289 - - gmx:100818186 885.945