Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod04g1284 | ATGAGGAACATGTTCGCTAGTCTTCATGCTTTGCTTCCGCAGCTTCCTTCTAAGGCGGACAAATCAACCATTGTGGATGAAGCAGTGAGCTACATCAAAAGTCTGCAGAAAACTGTTGACAAGCTAGAAAAGCTTAAACGAGAGAAGGACCAAGCTGTGTCCCCTATTGGGTGCCAGTCAACTGTGATCAACTCACACTGGAGCCCCTACGTTGACTCATCAGGAGACGCGTTCTCTTCAAATAACTTGGCAGGTGCATTGGGAAGAGTCTCAAATCCTTCAAATTCATCGTTTTCATCACCAGCCCCTCTGCAGCCAGTGGCCTTCAAGACTTTTGCTTCGCCAAATTTGGTGCTGACCATGTTTGGAAATGAAGCACAATACAGCATTTGTGCAACCAGGAAGCAAGGCCTCTTCACCACCATCGCTTTTGTGCTCGAGAAGCACAGGTTGGACGTCATATCTGCCAACATTTTGTGCAATCGTAATGCAAACAGATACATGATTCTGGCCCATGCAAGTCAAGCTTTACTTCAGTTCCAAGATCCAGCCTCAGTGGAGCAAACTTTCAGGCGTGCTGCTGGAGAGATTATTATGTGGCTTGCTTAA | 609 | 0.4663 | MRNMFASLHALLPQLPSKADKSTIVDEAVSYIKSLQKTVDKLEKLKREKDQAVSPIGCQSTVINSHWSPYVDSSGDAFSSNNLAGALGRVSNPSNSSFSSPAPLQPVAFKTFASPNLVLTMFGNEAQYSICATRKQGLFTTIAFVLEKHRLDVISANILCNRNANRYMILAHASQALLQFQDPASVEQTFRRAAGEIIMWLA* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod04g1284 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 50 | IPR036638 | GO:0046983 | |
| Dod04g1284 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 1 | 36 | IPR011598 | GO:0046983 | |
| Dod04g1284 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH95-LIKE | 1 | 201 | - | - | |
| Dod04g1284 | 202 | CDD | bHLH_AtbHLH_like | 1 | 43 | IPR045239 | - | |
| Dod04g1284 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 35 | IPR011598 | GO:0046983 | |
| Dod04g1284 | 202 | Gene3D | - | 1 | 55 | IPR036638 | GO:0046983 | |
| Dod04g1284 | 202 | PANTHER | - | 1 | 201 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
| Dod04g1284 | 202 | Coils | Coil | 25 | 52 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod04g1284 | 1 | 202 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 34.685 | 9.55e-29 | 107 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Dod04g1284 | HLH | 8.9e-06 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod04g1284 | - | - | adu:107469983 | 221.861 |