Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1282 ATGCAAGGTCAAGGAAGGACAATTGGTTCCTCCCCTGCAATTGTTAGTATGATGCAAGGGCCTAATTCCAGTGGCACTGATATGAATCATCAGTCTTCGTTGAATCACGTGCAAAGTGCAGTAGATTTCCGTTTGTCAGATTATAGAGGCTCTAGTGGTGAGACTGCATGTTTACGTGCTACTGGTTCTAATGTACAAAGCTTCAGTGGCTGGAATAATGGTGAATCTAGTTCTGGACTGATAAACCAAGTCGGTGATGAAGGTCTAAAATCAGAACATGGCCTGTCTTCTTCATGTAGTACTACTGCTGAGGATGGTCTCAGAACAGAGGAAAGGCCATTTGAACCAAGCAACATGATTTTTCCTGTTAGTTCAAATAATAATCTACATGGAAATCAATCAAGAATTCAGCCTTCATTTTTGCAAGGCTCTAGTTCTAATCACATAACACACAATGTAAATCTTGATATGGGGGACATTGCGCACACTGCTAATCGTGGGAAAGGCATAGCAGCTAGTAGCAGTGTTCATAACAATGATACCAGTGGATTTGATAGAGAGCATACATCATTTGGCAGTGCTTCATATAATCATCTAGGAACTTTATCTGAAAACCCTGAATACATGACCTGGGGAAATAGTGCCAGTTCAAGTTCTTTTGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTAGTCAACTATGTACTGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGTACGCTGGCCTACAAATCCTGTTGATCTCAATGTTTCTAGCAGCTTAAGTGTTTCTACTCCTTTGGAGGATATTCCAGTTATCAGCCCTCCATTACAGCAGAACTTGAGAAATGAAGTGAGACAAGAACCTGCCCATGCCTTTCCTTTAATAACTGTTGCAGAAAATGTCGAAAGGCCTCTAAGAACCTTTGATAGGAGAATGACCCATGTACAGCATCAGGAATCTGTTCCTCTCAATTTACCATCAACAGGGAGTGCTAGGCGTCATAATCATTCTTCTTCCCATCAAATACCTGGCTCTCACTCATTTAATGATTCTTTGGAATTGAGGTTAACAGCTGGAGTAACAGCTACCAATTCTGGTGCTCCTCAGAACCCATCACCTGCCCTTCACATGCATCCTTTTCCTTGGAATAGAGCTGCTAACCCTAGAGGGGCTAGATCTTCAACTTCTCATAACTCTGGAGAAAGAGCAGTACAGGAAGATTTTAATGTAAGAATGTTTTCAAGAGAGAGTACTGGGCACCCCATGAATGTGCCTGCATCTACAGGACATGAACCTATAACTTGGCGTACATCCTCTGCTAATGCAAACAATTCTGGAGGTGTACCTACTTCATCTTGGATTGGATCTAGTTCAAATGTCCACACATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCGACAGAAAATCTGCAAAGATTGTCTGAGTTCAGTCCTTGGTCTCTTTTCCCATCAATTAGCGCATCATCTGGTGTTCAGAATGGCCATTCTACTCCATCTCCTTCTGGTCCTCCTTCGTTTACTCAGGGTTCCCGCAGCAATCAACCATATCAAAGAGCAGCATTGTTATTGGAAAGAAGGGGTGGTGATGTTCTCTCTGCTCCACGGGCGTTAACCGTTGACAATGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAGGTCTTGATTGCAATGCGGAGGGGTGATAACTTACGTGCTGAGGATTATATGCTCTTTGATCCTTTCATATATCATGGTATGGCTGAAATGCATGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGACGTGAGCACTGGATTGAGTGAGGATATCATTATAAAGTTGATGAAACAGCAAATCTATATGTCTGCTATGGCAGAGTCTTCTAAAGATCTGGAACCTTGCTGTATCTGTCAGGAAAATTATGTTGATGGAGAGAATGTTGGTTCACTGGATTGTGGGCATGAATTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCCACATGA 2130 0.4272 MQGQGRTIGSSPAIVSMMQGPNSSGTDMNHQSSLNHVQSAVDFRLSDYRGSSGETACLRATGSNVQSFSGWNNGESSSGLINQVGDEGLKSEHGLSSSCSTTAEDGLRTEERPFEPSNMIFPVSSNNNLHGNQSRIQPSFLQGSSSNHITHNVNLDMGDIAHTANRGKGIAASSSVHNNDTSGFDREHTSFGSASYNHLGTLSENPEYMTWGNSASSSSFVNWGSSCKRKALEGSSSQLCTGGSSNSLLQSENVRWPTNPVDLNVSSSLSVSTPLEDIPVISPPLQQNLRNEVRQEPAHAFPLITVAENVERPLRTFDRRMTHVQHQESVPLNLPSTGSARRHNHSSSHQIPGSHSFNDSLELRLTAGVTATNSGAPQNPSPALHMHPFPWNRAANPRGARSSTSHNSGERAVQEDFNVRMFSRESTGHPMNVPASTGHEPITWRTSSANANNSGGVPTSSWIGSSSNVHTLPNPSWIVNPEVPTENLQRLSEFSPWSLFPSISASSGVQNGHSTPSPSGPPSFTQGSRSNQPYQRAALLLERRGGDVLSAPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIIIKLMKQQIYMSAMAESSKDLEPCCICQENYVDGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1282 709 MobiDBLite consensus disorder prediction 83 108 - -
Dod04g1282 709 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Dod04g1282 709 Pfam Ring finger domain 662 703 IPR001841 -
Dod04g1282 709 SMART ring_2 662 702 IPR001841 -
Dod04g1282 709 MobiDBLite consensus disorder prediction 324 356 - -
Dod04g1282 709 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 709 IPR045191 GO:0061630
Dod04g1282 709 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 709 - -
Dod04g1282 709 MobiDBLite consensus disorder prediction 326 356 - -
Dod04g1282 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Dod04g1282 709 MobiDBLite consensus disorder prediction 1 31 - -
Dod04g1282 709 CDD RING-H2_TTC3 661 703 - -
Dod04g1282 709 MobiDBLite consensus disorder prediction 506 531 - -
Dod04g1282 709 SUPERFAMILY RING/U-box 661 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1282 Dod-Chr4 33919085 33924291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1282 1 709 C3H Transcription Factor Family AT2G15530 37.517 3.88e-119 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1282 - K19041 gmx:100809024 1117.06