Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1276 ATGGCTCAGGTTCAGGTTCAAGCTCAGAATGCGATGGGGGGTCCGAACGGCGGTGCTGGGGGCGGCGGGAACCAGTTCGTGACGACGTCGCTTTACGTGGGGGATCTGGACCCTAGCGTGACGGAGTCGCAGCTGTATGACCTGTTCAACCAAGTGGGTCAGGTTGTGTCTGTTAGGGTTTGCACGGACATGGCCAGCCACAGATCCCTCGGTTACGGATACGTCAATTACAGCAACCCTCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTGTCGGTAACAAGCCTATCCGCATTATGTATTCGCATCGTGATCCTAGTATTCGTAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTGGACAAAGCAATTGACCACAAGGCATTACATGATACCTTTTCTACATTTGGAAATATCCTTTCTTGCAAGGTAGCTACGGACTCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAAAAAGCCATTGAGAAGCTGAATGGCATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTGCAACTGACAAGGTTAAATTCAACAATGTGTTTGTGAAGAATCTATCTGAATCAACCACTGATGATGAGTTGAAGAATGTTTTCGGTGAATTTGGGACAATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGGAAATCAAAGTGCTTTGGATTTGTAAACTTTGAGAATCCTGATGATGCTGTTAGGGCTGTTGAGGTTCTCAATGGCAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTACGTAAAAAACATAGATGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCATTTGGCACCATTACCTCTTGCAAGGTTATGAGGGATCCCAATGGCATCAGTCGCGGTTCAGGGTTTGTTGCATTCTCAACTCCTGAGGAAGCCTCTAGAGCTCTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTTGCCCAACGGAAAGAAGATAGAAGGGCTAGACTGCAGGCTCAATTTGCTCAAATGAGACCCATTGCAATGGGACCCACTGTTGGTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGCATTGGTCAACAACTATTTTATGGTCAAGGTCCTCCTGCTATCATTCCTTCCCAGCCTGGCTTTGGGTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTTCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGGCGTGCAGGTGCAGTCCAGCAGTCACAGCATCCAGTTCCACTCATGCCACAGCAGATGCTTCCTAGGGGACGTGTGTATCGTTATCCCCCTGGTCGGGGTATTCCTGATGTTCCCATGTCGGGGGTTGCAGGAGGCATGTTCCCTGTTCCATATGATGTTGGTGGGATGCCTATGCGTGATGCAGCACTCTCCCAGCAAATTCCAATTGGGGCTTTGGCTTCTGCTCTGGCAAATGCTTCTCCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTGTACCCTCTTGTGGAACAGTTGGAGCCTGATAACGCTGCCAAAGTGACAGGAATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCTGAAGCCCTTAAAGCAAAGGTGGCTGAGGCAATGGATGTCCTGAGGAATGTTGCACAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTTGCTTCATTATCACTCAATGACAACCTTGTTTCTTGA 1953 0.4808 MAQVQVQAQNAMGGPNGGAGGGGNQFVTTSLYVGDLDPSVTESQLYDLFNQVGQVVSVRVCTDMASHRSLGYGYVNYSNPQDAARALDVLNFTPVGNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGATDKVKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENPDDAVRAVEVLNGKKFDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNIDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIAMGPTVGPRMPMYPPGGPGIGQQLFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGAVQQSQHPVPLMPQQMLPRGRVYRYPPGRGIPDVPMSGVAGGMFPVPYDVGGMPMRDAALSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS* 651
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1276 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Dod04g1276 650 Gene3D - 547 630 - -
Dod04g1276 650 SMART poly_2 563 626 IPR002004 GO:0003723
Dod04g1276 650 SUPERFAMILY PABC (PABP) domain 492 644 IPR036053 GO:0003723
Dod04g1276 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Dod04g1276 650 CDD RRM4_I_PABPs 310 388 - -
Dod04g1276 650 PANTHER POLYADENYLATE-BINDING PROTEIN 18 633 - -
Dod04g1276 650 CDD RRM2_I_PABPs 115 191 IPR045305 -
Dod04g1276 650 SMART rrm1_1 312 384 IPR000504 GO:0003723
Dod04g1276 650 SMART rrm1_1 209 281 IPR000504 GO:0003723
Dod04g1276 650 SMART rrm1_1 118 190 IPR000504 GO:0003723
Dod04g1276 650 SMART rrm1_1 30 103 IPR000504 GO:0003723
Dod04g1276 650 PANTHER RNA BINDING PROTEIN 18 633 - -
Dod04g1276 650 CDD RRM1_I_PABPs 30 109 - -
Dod04g1276 650 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Dod04g1276 650 SMART rrm2_1 118 190 IPR003954 GO:0003676
Dod04g1276 650 SMART rrm2_1 30 103 IPR003954 GO:0003676
Dod04g1276 650 SMART rrm2_1 312 384 IPR003954 GO:0003676
Dod04g1276 650 SMART rrm2_1 209 281 IPR003954 GO:0003676
Dod04g1276 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Dod04g1276 650 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Dod04g1276 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Dod04g1276 650 Gene3D - 22 117 IPR012677 -
Dod04g1276 650 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Dod04g1276 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 624 IPR006515 GO:0003723
Dod04g1276 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Dod04g1276 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Dod04g1276 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Dod04g1276 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Dod04g1276 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Dod04g1276 650 CDD RRM3_I_PABPs 207 286 - -
Dod04g1276 650 Gene3D - 118 190 IPR012677 -
Dod04g1276 650 MobiDBLite consensus disorder prediction 473 492 - -
Dod04g1276 650 Gene3D - 193 291 IPR012677 -
Dod04g1276 650 Gene3D - 292 396 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod04g1276 Dod-Chr4 33853701 33860159 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1276 28 649 Eukaryotic Initiation Factors Gene Family AT1G49760 74.684 0.0 912
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1276 K13126 - gmx:100780329 1129.78