Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod04g1276 | ATGGCTCAGGTTCAGGTTCAAGCTCAGAATGCGATGGGGGGTCCGAACGGCGGTGCTGGGGGCGGCGGGAACCAGTTCGTGACGACGTCGCTTTACGTGGGGGATCTGGACCCTAGCGTGACGGAGTCGCAGCTGTATGACCTGTTCAACCAAGTGGGTCAGGTTGTGTCTGTTAGGGTTTGCACGGACATGGCCAGCCACAGATCCCTCGGTTACGGATACGTCAATTACAGCAACCCTCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTGTCGGTAACAAGCCTATCCGCATTATGTATTCGCATCGTGATCCTAGTATTCGTAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTGGACAAAGCAATTGACCACAAGGCATTACATGATACCTTTTCTACATTTGGAAATATCCTTTCTTGCAAGGTAGCTACGGACTCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAAAAAGCCATTGAGAAGCTGAATGGCATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTGCAACTGACAAGGTTAAATTCAACAATGTGTTTGTGAAGAATCTATCTGAATCAACCACTGATGATGAGTTGAAGAATGTTTTCGGTGAATTTGGGACAATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGGAAATCAAAGTGCTTTGGATTTGTAAACTTTGAGAATCCTGATGATGCTGTTAGGGCTGTTGAGGTTCTCAATGGCAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTACGTAAAAAACATAGATGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCATTTGGCACCATTACCTCTTGCAAGGTTATGAGGGATCCCAATGGCATCAGTCGCGGTTCAGGGTTTGTTGCATTCTCAACTCCTGAGGAAGCCTCTAGAGCTCTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTTGCCCAACGGAAAGAAGATAGAAGGGCTAGACTGCAGGCTCAATTTGCTCAAATGAGACCCATTGCAATGGGACCCACTGTTGGTCCTCGTATGCCAATGTACCCTCCTGGTGGTCCAGGCATTGGTCAACAACTATTTTATGGTCAAGGTCCTCCTGCTATCATTCCTTCCCAGCCTGGCTTTGGGTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTTCCAAACTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGGCGTGCAGGTGCAGTCCAGCAGTCACAGCATCCAGTTCCACTCATGCCACAGCAGATGCTTCCTAGGGGACGTGTGTATCGTTATCCCCCTGGTCGGGGTATTCCTGATGTTCCCATGTCGGGGGTTGCAGGAGGCATGTTCCCTGTTCCATATGATGTTGGTGGGATGCCTATGCGTGATGCAGCACTCTCCCAGCAAATTCCAATTGGGGCTTTGGCTTCTGCTCTGGCAAATGCTTCTCCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTGTACCCTCTTGTGGAACAGTTGGAGCCTGATAACGCTGCCAAAGTGACAGGAATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCTGAAGCCCTTAAAGCAAAGGTGGCTGAGGCAATGGATGTCCTGAGGAATGTTGCACAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTTGCTTCATTATCACTCAATGACAACCTTGTTTCTTGA | 1953 | 0.4808 | MAQVQVQAQNAMGGPNGGAGGGGNQFVTTSLYVGDLDPSVTESQLYDLFNQVGQVVSVRVCTDMASHRSLGYGYVNYSNPQDAARALDVLNFTPVGNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGATDKVKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENPDDAVRAVEVLNGKKFDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNIDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIAMGPTVGPRMPMYPPGGPGIGQQLFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGAVQQSQHPVPLMPQQMLPRGRVYRYPPGRGIPDVPMSGVAGGMFPVPYDVGGMPMRDAALSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS* | 651 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod04g1276 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | Gene3D | - | 547 | 630 | - | - | |
Dod04g1276 | 650 | SMART | poly_2 | 563 | 626 | IPR002004 | GO:0003723 | |
Dod04g1276 | 650 | SUPERFAMILY | PABC (PABP) domain | 492 | 644 | IPR036053 | GO:0003723 | |
Dod04g1276 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
Dod04g1276 | 650 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 633 | - | - | |
Dod04g1276 | 650 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Dod04g1276 | 650 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | PANTHER | RNA BINDING PROTEIN | 18 | 633 | - | - | |
Dod04g1276 | 650 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Dod04g1276 | 650 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 623 | IPR002004 | GO:0003723 | |
Dod04g1276 | 650 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Dod04g1276 | 650 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Dod04g1276 | 650 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676 | |
Dod04g1276 | 650 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Dod04g1276 | 650 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 551 | 628 | IPR002004 | GO:0003723 | |
Dod04g1276 | 650 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Dod04g1276 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | Gene3D | - | 22 | 117 | IPR012677 | - | |
Dod04g1276 | 650 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 391 | IPR035979 | GO:0003676 | |
Dod04g1276 | 650 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 624 | IPR006515 | GO:0003723 | |
Dod04g1276 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 101 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 187 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 381 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Dod04g1276 | 650 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
Dod04g1276 | 650 | Gene3D | - | 118 | 190 | IPR012677 | - | |
Dod04g1276 | 650 | MobiDBLite | consensus disorder prediction | 473 | 492 | - | - | |
Dod04g1276 | 650 | Gene3D | - | 193 | 291 | IPR012677 | - | |
Dod04g1276 | 650 | Gene3D | - | 292 | 396 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod04g1276 | Dod-Chr4 | 33853701 | 33860159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod04g1276 | 28 | 649 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 74.684 | 0.0 | 912 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod04g1276 | K13126 | - | gmx:100780329 | 1129.78 |