Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1260 ATGAGGAAGCCTTGCTGTGATATCAAAAACTTAAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATAGATTATATCAAGAAACACGGCGAGGTTTGCTGGCGTACACTTCCTCAAGCTGCAGGTTTACTTCGGTGCGGAAAAAGCTATAGGCTGAGATGGATAAATTATTTACGGTCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGACCTCATCATCAAGCTTCATGCACTGCTAGGCAACCGGTGGTCACTAATAGCTGGAAGATTGCCTGGACGAACAGATAATGAAGTGAAGAACTATTGGAACTCTCAAATAAGAAGAAAGCTCAATAGCAAGGGTGTTGATCCGAACAATCATCGTTTAATAAGCCACAAGATCCCTCCCCTTCAAAATCCACCCATGTCTAATAGCTCAAAATCATATGCCTTGAAAGGCATTTCCAAAAATGAGACAACAGAATCCCATGTTGACAATAATGGACAAGTCTCATCAGATGCTGCAAGTGGCGAGGATGAGTCTAATGCCTTGCCGGATTTAAACCTTGATCTCTCCATGAGCATTCCTTCATCATCGCTTGCACCCAGTATTATTAATGCTGAAGACAATCTAAAACCAATTCATGAATCTAACTCGTCAAGGGAACCGCTTTTTTCTTCCCCTTCAACACTTCTTCTGTTTCAGTAA 702 0.416 MRKPCCDIKNLNKGAWSKQEDQKLIDYIKKHGEVCWRTLPQAAGLLRCGKSYRLRWINYLRSDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSQIRRKLNSKGVDPNNHRLISHKIPPLQNPPMSNSSKSYALKGISKNETTESHVDNNGQVSSDAASGEDESNALPDLNLDLSMSIPSSSLAPSIINAEDNLKPIHESNSSREPLFSSPSTLLLFQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1260 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 205 - -
Dod04g1260 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dod04g1260 233 CDD SANT 68 108 IPR001005 -
Dod04g1260 233 MobiDBLite consensus disorder prediction 117 183 - -
Dod04g1260 233 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dod04g1260 233 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Dod04g1260 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dod04g1260 233 Gene3D - 5 65 - -
Dod04g1260 233 CDD SANT 15 60 IPR001005 -
Dod04g1260 233 MobiDBLite consensus disorder prediction 135 176 - -
Dod04g1260 233 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Dod04g1260 233 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dod04g1260 233 SMART sant 65 113 IPR001005 -
Dod04g1260 233 SMART sant 12 62 IPR001005 -
Dod04g1260 233 Gene3D - 68 132 - -
Dod04g1260 233 MobiDBLite consensus disorder prediction 215 233 - -
Dod04g1260 233 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dod04g1260 233 PANTHER - 2 205 - -
Dod04g1260 233 MobiDBLite consensus disorder prediction 212 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1260 Dod-Chr4 33596346 33599200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1260 2 194 MYB Transcription Factor Family AT4G38620 54.146 9.56e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g1260 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1260 K09422 - gmx:100814923 307.375