Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1259 ATGGCCGGCGAACTTGCCGGAGACCGGGCGCCGGAGCTCCTCGGCCTCGTCCACGACATCGCTGGGATGTGCGCCGGCGCCGTCGGGGGCGGAGGAGGCTCCTCCGCGGACTCCATTGGCGGCGGCACATTCAGGAAGGACTGCACCGATCTGGTACGCCGGATCTCGCTCCTGACGCACTTGTTCGAGGAGATTAAGGAGCTCAAGAAGGCTGTTGGCTCCGCTTCGAGTTCCTCGTGTGCTGAAACAGAGGTTGTTGGTGTTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGATGCTGCTTCGTGGTCGTGTGATGTGGTGATGGCTCTTCAGTCAGCGAAGCGCTTGCTTTCTGTGGCAAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTGTCTTCCAATTTCAGAGCGTGACATGGAAATTGGAGAAACTATTAAGCAACTTACCATATGACAATTTAGACATTTCAGAGGAAGTCAGAGAACAGGTGGACTTGGTGAGAACACAATTAAGACGAGCCAGTGAAAAATACGGGTATATGATTTCAAACATGCCATCTTCTGAATTATCTGAGCCTCTGGCTCAAGAAATCAGTCAGGTTCTTGGTAAATCCGTGGGTGGATTGCATAAACGAAATAGCTGTCCTGAAAATTTATCAGAATTAGACAGAATTTCTCGAAACAATGGAGGACAAGGTTGCAGCACATTTCAGGCAGGTTCTCGCTTGGAAAGAGCAAGGAGTATCCCTACCCTTTCAGAGACTTCCTTGACAGATGTAACTGATGCTGAAAGTCAAGAAAATTCTGAGAGTAAGAGTCTACCTGGAGTTAAAAGGCCTGAGGCAATTGTAATTCCTGAAGACTTCCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACCGGCCAGACATATGAGAGATCCTATATACAGAGATGGATAGATTGTGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTGCAGCATTTGACCCTTACACCAAATTATGTTTTAAGGAGTCTTATTTCTCAGTGGTGTATAGAGCACAACATTGAACAGCCAACAGGACTAACTAATGGCAAAATTAAGAAAAGTGATGGATCATTCAGAGATGTCACAGGTGACATAGCAGCAATCGAGGCTCTTGTCCGGAAGCTCTCCAGCCGGTCTGTTGAGGAGCGTAGGGCAGCTGTTACTGAAATTCGATCACTGTCCAAAAGAAGCACAGACAACAGGATACTAATTGCTGAAGCCGGAGCAATTCCAGTTCTAGTCAACCTTTTAACTTCAGAAGATGTATTGACGCAGGACAATGCAGTTACTTCAATCCTCAATCTTTCTATATATGAAAACAACAAGGGACTCATAATGCTTGCCGGTGCCATCCCATCCATTGTCCAGGTGCTCCGAGCAGGAACCATGGAAGCAAGAGAAAATGCAGCAGCTACCCTCTTTAGCTTGTCACTTGCTGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCAGCATTGGTGGAATTGCTCGAAAACGGGAGCCCTAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGTATTTATCAAGGGAACAAGGGCAGGGCCATTAGGTCAGGGATTATCACAGCATTGTTGAAGATGCTCACAGATTCAAGCAAGTCAATGGTCGACGAAGCCCTAACAATAATGTCGGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATAGTTAAAGCCAGCACCATACCAGTTTTGATAGATCTTTTGAGGACAGGATTACCTCGCAACAAAGAGAATGCAGCAGCCATTTTACTTGCCTTGTGCAAGAGGGATGCCGACAATCTTGCTTGCATAAGTAGACTTGGTGCTGTCATACCTCTTTCTGAACTTGCTCGGAGTGGTACAGAGAGGGCCAAAAGGAAGGCTACTTCGTTATTGGAGCATCTTCGCAAGTTACAGCAGCTTTGA 2013 0.4694 MAGELAGDRAPELLGLVHDIAGMCAGAVGGGGGSSADSIGGGTFRKDCTDLVRRISLLTHLFEEIKELKKAVGSASSSSCAETEVVGVGGGDGGGGGGDAASWSCDVVMALQSAKRLLSVARNFRSNCSSDGAAKTIVFQFQSVTWKLEKLLSNLPYDNLDISEEVREQVDLVRTQLRRASEKYGYMISNMPSSELSEPLAQEISQVLGKSVGGLHKRNSCPENLSELDRISRNNGGQGCSTFQAGSRLERARSIPTLSETSLTDVTDAESQENSESKSLPGVKRPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLENGSPRGKKDAATALFNLCIYQGNKGRAIRSGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARSGTERAKRKATSLLEHLRKLQQL* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1259 670 SUPERFAMILY ARM repeat 390 664 IPR016024 -
Dod04g1259 670 Pfam U-box domain 291 362 IPR003613 GO:0004842|GO:0016567
Dod04g1259 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515
Dod04g1259 670 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 37 667 - -
Dod04g1259 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Dod04g1259 670 Coils Coil 163 183 - -
Dod04g1259 670 CDD RING-Ubox_PUB 295 337 IPR045210 -
Dod04g1259 670 Gene3D - 465 570 IPR011989 -
Dod04g1259 670 Gene3D - 372 464 IPR011989 -
Dod04g1259 670 SMART arm_5 461 501 IPR000225 GO:0005515
Dod04g1259 670 SMART arm_5 502 542 IPR000225 GO:0005515
Dod04g1259 670 SMART arm_5 543 583 IPR000225 GO:0005515
Dod04g1259 670 SMART arm_5 420 460 IPR000225 GO:0005515
Dod04g1259 670 SMART arm_5 584 624 IPR000225 GO:0005515
Dod04g1259 670 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Dod04g1259 670 MobiDBLite consensus disorder prediction 254 279 - -
Dod04g1259 670 SUPERFAMILY RING/U-box 290 365 - -
Dod04g1259 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Dod04g1259 670 PANTHER U BOX DOMAIN-CONTAINING 37 667 - -
Dod04g1259 670 Pfam Armadillo/beta-catenin-like repeat 503 541 IPR000225 GO:0005515
Dod04g1259 670 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Dod04g1259 670 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Dod04g1259 670 Gene3D - 571 669 IPR011989 -
Dod04g1259 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 472 514 IPR000225 GO:0005515
Dod04g1259 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515
Dod04g1259 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Dod04g1259 670 Coils Coil 650 670 - -
Dod04g1259 670 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1259 Dod-Chr4 33571661 33575572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1259 39 669 U-box Gene Family AT1G23030 62.243 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1259 - - adu:107484242 1069.3