Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1246 ATGGCGGTTTTACCTGGAAGCTCCTCCAGCTTGGAATTGACCATATCTGTCCCAGGATTTGCTTCTGCCCCAACTCTTCTTTCCGCATCATCATCTGTGAAAGAGTTGGACATAAACCAAGTACCCTCGGAAGAAGAATGGATGGCATCAAACATGGAGGACGAAGAAGAAAGCAGCAATGGAGACCCCCCACGCAAGAAACTCCGTCTCACGAAGGAACAATCCCGTCTCCTTGAAGAAAGTTTTAGACAAAACCACACTTTAAACCCTAAGCAGAAAGAAACATTGGCAATGCAGCTGAAGCTACGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACCTGAAGAGGTGGTTCGGGTCGCTGACAGAGCAGAACCGGAGGCTGCAGAGAGAGGTGGAGGAGCTCAGAGCAATGAAGGTGGGCCCACCCACTGTGCTATCCCCTCACACCACCGACCCACTCCCAGTCCCAGCATCAACCCTAACAATGTGTCCCCGCTGCGAGCGTGTCACCACCACAACCACAACCACCGCAGCCTCCGCCGCCTCCTTGTCGTCTAAAGTACCCACCTCTACTGCTGCTCCTACCCTCTAA 642 0.5327 MAVLPGSSSSLELTISVPGFASAPTLLSASSSVKELDINQVPSEEEWMASNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKETLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVLSPHTTDPLPVPASTLTMCPRCERVTTTTTTTAASAASLSSKVPTSTAAPTL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1246 213 MobiDBLite consensus disorder prediction 191 213 - -
Dod04g1246 213 Gene3D - 57 127 - -
Dod04g1246 213 Coils Coil 134 154 - -
Dod04g1246 213 SMART HOX_1 63 125 IPR001356 GO:0003677
Dod04g1246 213 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Dod04g1246 213 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Dod04g1246 213 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Dod04g1246 213 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Dod04g1246 213 PANTHER - 1 198 - -
Dod04g1246 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 198 - -
Dod04g1246 213 CDD homeodomain 64 122 IPR001356 GO:0003677
Dod04g1246 213 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Dod04g1246 213 MobiDBLite consensus disorder prediction 38 67 - -
Dod04g1246 213 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1246 Dod-Chr4 33371886 33376191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1246 33 187 Homeobox Transcription Factor Family AT1G70920 65.000 8.91e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod04g1246 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1246 K09338 - gmx:100775341 341.658