Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1240 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGGCGCGATTTCTTCCAGCAACAGCCTTCAACTTCATCGTCTTCTTCCTCCATCCTTCAATCTCTCCCTCTTCATGTGTCTTTCGATCACGGCTATTATTTATTGGTAAAATCTATCCAAGAACTGCGGGAGAAAAAAGAGGGCCTTGTTACGGTTGGCATTGGTGGTCCTAGTGGTTCTGGCAAAACAAGCTTAGCAGAGAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTACCATGATGGAGTTGATGAAGGGAATGATCTGGATTTTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAAAAGGAGATGATACATTAATCCCAGTGTTTGATTATCAGCAAAAGAGACGTATTGGTTATAAAGCAATAAAGAGTGCTTCATCAGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCATTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCATATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTCGTCTCATCATTTAGAGAGCCAATCTACAAGGTTAAATGCAGAAGTGAGTCTCCAGACGGACATTCAAGTATTGTCTTTCAAGGAAGTGAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCGCCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATCAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATAAGGCCTAAGGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGTTGGCTCTTGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCTACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACCATTGATGCTCTTGGTGAGACATTCATGGTGATGAGAGGGACTAATAGGAAGACTGTTGGAACAGAAGCATTGAGGATCGGTATCAATGGACCTTGGATTACTAAATCGTATCTGGAAATGATTCTTGAAAGAAGAGGTGTACCTCGTCTTAGTACACCACCGCTTGTGACTAATACATCTGTTCCTGCTAGTCAGGACACAGCAATCGTTGCACCAAAGCCCATTCGTGTTACTCCTAACCTTGTTACAGGGTTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACAAAATCTAAGATGGAACCTGTTGTGGCAACATGGCATTTTATATCTTCGGATTCCTCTCACCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATACTATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTGATAGTTGGAATTGGAGGTCCAAGTGGATCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTAGTCTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCGGCTCACTTGACTTATCTTTGTTATCAAAGAATATTGATGACATAAGAAATGGTCGAAGAACAAAAGTACCTATATTTGACTTGGAATGTGGTGCTCGAAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTCTATGCTCTGCATCCTGATATCCGACTATCACTTGACTTTTGGATTGCTGTTGTAGGAGGTGTTCACTCACATTTAATTTCACGAGTTCAACGGGATAAGAGCAGAGTGGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAACACATTGAACCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCATTGTTTGTGTTGAAGAGTAACAAGAAAGTAGCATATCAAGATATTCTTGCAATTCTTGATCGAGCAAAATTTTGCAGTTCAGTTCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGGCAGTTGACAGATAGTGATTGTATTCGTGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTAGTACGGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCTCTGGCCCATACATTCAGATCAAGGGTGTTAATAAAGATGCAGTGGCAGCAGCGGGTTCAATGCTTAAATTGGATGGGTCATATACAACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTGCCAGCACTGGAAATAACTTCTGGCGGTATTCACTCTCAGCAATCAGCAAGGCTGCTAGAGATTGTTGAATTCATTCAATCTCAGGGGTGTAGCTCTGCTTCAGAATCCTCACCAAGTAGGGTAGTCTCTCCTCTTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGGTGGCTTGCTATAAATACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCACTGTATCAAAGGAGGCGTCAATGA 2859 0.4019 MDDEVVQRVFHEGGRDFFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYHDGVDEGNDLDFIDFDTLIKNLEDLTKGDDTLIPVFDYQQKRRIGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREPIYKVKCRSESPDGHSSIVFQGSEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGKVSMSFETIDALGETFMVMRGTNRKTVGTEALRIGINGPWITKSYLEMILERRGVPRLSTPPLVTNTSVPASQDTAIVAPKPIRVTPNLVTGFEDLSQPWTRSPTKSKMEPVVATWHFISSDSSHPDNSVLDPSSFRDTIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFGSLDLSLLSKNIDDIRNGRRTKVPIFDLECGARSGFKELEVSEDCGVIIFEGVYALHPDIRLSLDFWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDRAKFCSSVQKFIDIYIRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVNKDAVAAAGSMLKLDGSYTTKSYLEIILERLPALEITSGGIHSQQSARLLEIVEFIQSQGCSSASESSPSRVVSPLEGIIEEMQSRIRRLERWLAINTVLWTFLMSALVGYSLYQRRRQ* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1240 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 604 943 - -
Dod04g1240 952 PANTHER URIDINE KINASE 478 604 - -
Dod04g1240 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 687 IPR027417 -
Dod04g1240 952 SUPERFAMILY CYTH-like phosphatases 715 859 IPR033469 -
Dod04g1240 952 Gene3D - 516 693 IPR027417 -
Dod04g1240 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 478 604 - -
Dod04g1240 952 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Dod04g1240 952 PANTHER URIDINE KINASE 604 943 - -
Dod04g1240 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Dod04g1240 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Dod04g1240 952 Pfam Phosphoribulokinase / Uridine kinase family 109 223 IPR006083 GO:0005524|GO:0016301
Dod04g1240 952 SMART AAA_5 61 211 IPR003593 -
Dod04g1240 952 SMART AAA_5 516 660 IPR003593 -
Dod04g1240 952 PRINTS Uridine kinase signature 517 534 - -
Dod04g1240 952 PRINTS Uridine kinase signature 638 648 - -
Dod04g1240 952 PRINTS Uridine kinase signature 544 555 - -
Dod04g1240 952 Gene3D - 63 239 IPR027417 -
Dod04g1240 952 PANTHER URIDINE KINASE 2 420 - -
Dod04g1240 952 Gene3D - 701 864 - -
Dod04g1240 952 CDD UMPK_like 64 226 - -
Dod04g1240 952 CDD UMPK_like 519 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1240 Dod-Chr4 33278759 33296463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1240 512 675 PRT Gene Family AT1G55810 25.281 5.00e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1240 - - gmx:100778905 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1240 04 33278759 33296463 Dod05g1837 05 43934893 43941090 PCT