LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1227	ATGGGACGCGTGAGAACCAAGACCGTGAAGAAGTCCTCTCGACAAGTGATCGAGAGGTACTACTCCCGCATGACCCTCGACTTCCACACCAACAAGAAGGTTCTGGAAGAGGTGGCCCTCATCCCTTCCAAGAGGCTCCGGAACAAGATCGCCGGGTTCTCGACCCACCTCATGAAGCGAATCCAGAAGGGACCAGTGAGGGGCATCTCCCTGAAGCTTCAGGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTCCCTGACGTCTCCGCCATCGACACCCAGAACATCGAGGTTGACAAGGAGACCATCGACATGCTCCAGGCACTCGGAATGTCCGACATCCCAGGTATCACCCAGGTCGACCCTGTCCCTGTCCAGCAGCTCCCCTTTAGTCGCCCCGGTGGTTTCGGTGGTGCTCCTAGGAGCGCTGTGTTCACCCTGGCTATGGGTTTCATTGCCTGTGCTGCTGCTGCTGCTAATCTGATCTGA	489	0.5808	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIDTQNIEVDKETIDMLQALGMSDIPGITQVDPVPVQQLPFSRPGGFGGAPRSAVFTLAMGFIACAAAAANLI*	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1227	162	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	PANTHER	40S RIBOSOMAL PROTEIN S17	1	137	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Dod04g1227	162	PANTHER	40S RIBOSOMAL PROTEIN S17	1	137	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1227	Dod-Chr4	33115608	33116414	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1227	1	141	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	80.420	1.29e-76	223

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1227	K02962		-	gmx:100527036	237.269