Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1186 ATGGAGGATCAGGGAGTTTTAGGTGGTGGTGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGGTGAGGAGGAGGAAGCATGGAAAGAAGCACAGGAGCTGGTGGTTGAAGAGTTGAGGGTTGACCTTGATGGGTTTTCTGTGAAGTTGTTCTTTAAGGGCTTGTCATTAGCTGGGGTTGAAAACTCTAGTTCCGGATTTTCTGGAATTGGGGTGTTTATGGAGAGAGCATCTGGTCTTCCTGTTATCCGGGTGCAGAAAAAGCTTGATTTTTACGCAGAGGAGCCACTGGTTGACTACTTGGCTCTCATGGATGGTTTGCTGGAAGCTAAGCAGAACAAGATCCGCTGTGTTCATGCTTTTACAGATTCCGAGTTGTTGTATGATCAGATAAAATTTGAGAAAAATCTTGAGATGCCACTTTTGAAGGCACTGAGAGAAAGGATTTTGGAACATGCCAACAATTTTGAAGATTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTGGCCAAAGTAGCAATTGGACTCATCACTTTTCCTGTAAATGGTGAGCGATTACTTGACAGCTGTTCTATTTGCCGCGAAGACAAGCCATTGGCAATTATGGTCACCATGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGGTTCTATGCTGATAAAAAAGTACAAGCATGTCAGGTCCCTATAAAATGTCCTCATCCAGGATGCAAGTATTATATTTCTGTCACTGAGTGTAGGTCTTTCCTTCCATTCAATTCCTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATATTCTGCATTCAGATAGGATTTACTGCCCATATCCAAATTGCTCTGTTCTCCTTGATCCTCATAAGTGTTTATCAACTATGGCTAGTTCATCTAGTCAGCCAGAGAATTCCTGTGTTGAATGTCCTGTTTGTCAGAGGTTTATCTGTGTAGATTGTAAGGTCCCTTGGCATTCTTCTATGAGCTGTGAAGAATTTCAGAATCTTCCAGAGGAGGAGAGAGATGCTTCTGACATTACTTTACATTGCCTTGCACAGAATAAAAGGTGGAAGCGTTGTCAGCAATGTCGTCGGATGATTGAGCTTACTCAAGGTTGTTTCCACATGACATGCTGGTGTGGCCATGAGTTTTGTTATTCTTGTGGTGCGGAATATCAGGATGGTCAACAGACATGTCAATGTGCATTCTGGGATGAAGACAACTCTGAAGACTCAGCGTCGCACTCTCTGCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCCCGCCCCATGATCATGGATGCATACTCAGACCAAGAACGATCACAGCTAGCGCTTATACAGAGGTTTCTAGCTGGGGGTTTTAGTCTGAGTGATCATCACCCTTACGAATCACCTCCCCGCTGTACAGATTCCTATGCTGATGCAATGAAGGATCTTCATCAACTTCCGTGGCTTGAGAGGTTTGTGTCTGTGATAAGCGATGACTACGAAGATTATCTTCAGTGA 1542 0.4339 MEDQGVLGGGVGREEEEDEFCSCCEGEEEEAWKEAQELVVEELRVDLDGFSVKLFFKGLSLAGVENSSSGFSGIGVFMERASGLPVIRVQKKLDFYAEEPLVDYLALMDGLLEAKQNKIRCVHAFTDSELLYDQIKFEKNLEMPLLKALRERILEHANNFEDFVLNLVPSIDLEQPLQLAKVAIGLITFPVNGERLLDSCSICREDKPLAIMVTMKCSHKFCSHCLRFYADKKVQACQVPIKCPHPGCKYYISVTECRSFLPFNSFESLEKALAEANILHSDRIYCPYPNCSVLLDPHKCLSTMASSSSQPENSCVECPVCQRFICVDCKVPWHSSMSCEEFQNLPEEERDASDITLHCLAQNKRWKRCQQCRRMIELTQGCFHMTCWCGHEFCYSCGAEYQDGQQTCQCAFWDEDNSEDSASHSLQESEQWAWETFNSRPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYESPPRCTDSYADAMKDLHQLPWLERFVSVISDDYEDYLQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1186 513 Gene3D - 336 493 - -
Dod04g1186 513 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 512 - -
Dod04g1186 513 Gene3D - 52 185 IPR036397 GO:0003676
Dod04g1186 513 SUPERFAMILY RING/U-box 352 416 - -
Dod04g1186 513 SMART ibrneu5 349 408 IPR002867 -
Dod04g1186 513 SMART ibrneu5 267 339 IPR002867 -
Dod04g1186 513 SUPERFAMILY Ribonuclease H-like 67 169 IPR012337 -
Dod04g1186 513 Pfam IBR domain, a half RING-finger domain 278 339 IPR002867 -
Dod04g1186 513 Pfam Reverse transcriptase-like 64 169 IPR002156 GO:0003676|GO:0004523
Dod04g1186 513 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Dod04g1186 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 278 IPR013083 -
Dod04g1186 513 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Dod04g1186 513 SUPERFAMILY RING/U-box 199 276 - -
Dod04g1186 513 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Dod04g1186 513 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 512 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1186 Dod-Chr4 32605516 32608074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1186 35 399 C3H Transcription Factor Family AT2G19610 26.371 2.12e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1186 - - gmx:100783040 849.736