Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1176 ATGAAAGAGGGTGGTAGGAAACAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTCCGAAGAAGGTGCGCCCAGGATTGTGTGTTTGCCCCTTATTTCCCAGCTGATGAGCCCCAGAAGTTTGCAAATGTGCACAAGGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACCTACCAGAACATCAGCGAGGAGACGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGGGTGAGAGACCCTGTGTATGGGTGCGTAGGTGCCATCTCTTCTCTTCAGCAACAGATTGATGTGCTTCAGACCCAATTGGCTGTCGCCCAGGCCGAGGCCGTGCACCTCAGGGTGCGCCAGACCGCACCCCTTTGGAATCAAGGCCATAACAGCCCAACCAATAGTGGCTCCCCATCACAATCCAAGCCCATTTATGACATGGACATGGTGGTGGACCAGGCCACTTACGGTGATTCCATGTGGTCATCGTAA 492 0.5386 MKEGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTAPLWNQGHNSPTNSGSPSQSKPIYDMDMVVDQATYGDSMWSS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1176 163 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Dod04g1176 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 141 - -
Dod04g1176 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 141 - -
Dod04g1176 163 Coils Coil 92 112 - -
Dod04g1176 163 MobiDBLite consensus disorder prediction 124 143 - -
Dod04g1176 163 MobiDBLite consensus disorder prediction 124 142 - -
Dod04g1176 163 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1176 Dod-Chr4 32428484 32431893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1176 1 162 AS2 family AT1G31320 71.345 5.64e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod04g1176 LOB 5.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1176 - - gmx:100802822 299.671