Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1174 ATGGAGTTCGAGGTGAAGCCTGTTGGCGGCATACACAACTGCTTCGTATCCCTTCCCCTTCCTCTCATCCAAACCCTCCAGTCCACGCGATCATCTCCGCTCCCTCAAATCCTCGCCTTCGAGCTTCGCTCTTCCTCTCACCCAACGAACCTCTGGTTCGTCGCTTGGTCCGGCGCCACCTCTTCTTCTTCTTCTGCCATCGAGGTCTCGAAACAATTCGCGGAATGCATTTCGTTGCCGAATCATGGGACAGTTCAGGTGAGAGCTGCTTCCAATTTGGCTCATGCCTCTCTTGTTACGATCGAACCTCTCACGGAGGATGACTGGGAGATATTGGAGCTCAACTCCGAACAGGCTGAGGCTGTAATCCTAAACCAGGTCAGGATTGTTCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATTACATTCCATGTGGCTTCTGTTTTCCCGAAGAAAGCGGTGGTACAACTCATGCCAGGAACTGAGGTTGCAGTTGCTCCCAAAAGGCGCAAAAGAATTTCTGATTCTGCAGGAGATTCACGTCTAGAATCCCATGATAAAGGGCATACTGCAAAGATGCTTCTCCGTATACAAGATCCTGGGGGGTTATGTCATACCAGTACTCATGTCAAAGGTGTTGAGCTTCATATAGGGCTTACTTCTGTTGCTTTTGTTCACCCAGAAACAGCCAAACACTTCAGATTTAACATGCTTCAGTTGGTTTCCATTGTGCCAAGAATATCCAAGGAGAATGCTAATATTTCCAGAACCAATATTATGAAAGCCAAAGGCGGGTCAACTGTTAATGAAGTTGAGAATGGAAGTTTAGCTGACAAGAAAGAACATCGACAAGCAATTGTTCATCTCTTGTTTTCAGAATCTGTGGCTGCAGGACATGTGATGCTAGCTAAGTCTCTTCGCCTCTATTTGAGAGCTGGGCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAGAAAAATATTCCTTCCATCTCTCTTTGTCCTTGCAAATTCAAACTATTAAGGCAGGATAATACTATCGAGAAAGATGGTCTTGAAGTTTTTCATGGCCACGAGAATCACTTGAATGGAAAATTGCTTGCAAAATCTACACCCAGTGCCTTTGTGGATACACTAGATTGGTCAATCAACAATGAAGTTGTTGCAGCTCTTTCTGACGAATCGAATCACAAAGTAGAGGAAGAGGCTGAAAATCAATCTCAGAATCAAAAGGGGTTACAGAGTCTTGTTCGACTATGGTATATTGCACAACTCGAGGCAATTACTTCCCTTGCTGGCATTGAGGTTAGTTCGTTGGTTTTGGGTAGTAAAACCTTGCTTCATTTCGAACTAAGTTGTTACAAGCTTGGGAGTAATGGGAAGGTTCCACGAGCTTATAATTCTTCAGAGAACAGTGGCAAGACTGCTGAAACTTTATTTATATTGGACTTTGGTGATGAATATCTGCATCATGGGAAACTTGGTGCATATGAAGTTGCTCTTGGTGAAAGTCTCAATAACATCAATGCTGTGGATCTGAAGCTTTTTGAAGGGATGAAATTGGGTGATCCTGTGTCTATTCATTCTGTAGATGAGAGAGCTTCTGAAGAACACATCAGTTCAGATGTATCTTTCCCTAGCTGGATGGAGAAACCTGCTTCTGATGTTATCAATCGGATGTTGGTATTGTTATCTTCAGCATCTAGTTTGTGGTTTGGTTCATGTAACTTCCCACTCCCTGGACATGTTCTAATATATGGACCTTCAGGCTCTGGGAAAACTTTATTATCAAGGACCGTGGCCAATTCCCTTGAGAATCACAAAGACATCTTAACACACATAATTTTTGTGCCCTGCTCAAAATTGGCTTTGGAGAAGGTCTCAATTATTCGCCAAGAACTTGCAAACCATGTAGCTGAAGCTTTAAACCATGCGCCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCTCTGATTCAGAAGGATCTCAGTCCTCAATGTCTGTTGCTGGTCTTGCAGATTTTCTGGTTGACATCATTGACGAATATGGGGAGAAGAGGCGGAAATCATGTGGATTTGGACCTGTAGCCTTCATAGCTTCCATACAATCTCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACGTACAGCTGCTGGCTCCTGCAGCTTCAGAGCGTAGAGCTATGTTGAAGCATGAAATACAAAGGCGTCACTTGCGGTGTGGTGATGACATCCTGCTTGATGTGGCTGTCAAATGTGACGGTTATGATGGTTATGATCTGGAAATATTGGTTGACAGAACTGTCCACGCTGCTGTCTGGCGGTTTTTGCCATGTAATGCTGCCAATGAGCACGAGAGTCCTGCTTTACTAAGGGAGGATTTCACCCAGGCGATGCATGATTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGGTGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGAAAAACTCACATAGTTGGTGCTGCTGCAGCTGCTTCATCTCTACGATTTATATCAGTGAAAGGGCCGGAGCTGTTGAACAAGTATATTGGTGCTTCTGAACAAGCTGTCAGGGATATATTTGCTAAAGCAGCTGCTGCAGCACCGTGCCTACTATTTTTTGATGAATTTGATTCTATTGCCCCTAAGAGAGGGCATGACAATACTGGAGTAACTGACCGTGTTGTTAATCAATTTCTGACGGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTATTTGCTGCAACAAGTAGACCAGATTTACTTGATGCAGCGCTGTTGAGACCTGGTAGGCTGGATCGGCTTTTATTCTGTGATTTTCCATCGTGGCAGGAGAGATTGGAAATTCTGACAGTGCTTTCTAGAAAGTTACCAATGGCACATGATATAGATTTGGCCACAGTTGCTAAAATGACCGAGGGATTTAGCGGAGCTGACCTCCAAGCTCTTCTCTCAGATGCACAGCTTGCAGCGGTTCATGATGTTCTGGAAAATGCAGATGCCTCTGAGCCAGAGAAAACACCAATTATTACAGATGCGCTTCTGAAGCTCACTGCCTCCAAAGCTAGACCATCTGTTTCAGACGAAGAGAAAAGAAGACTTTACAGTATTTATAGCCAGTTCCTAGATTCAAAGAGATCCGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGAGCCACTCTAGCATGA 3393 0.4385 MEFEVKPVGGIHNCFVSLPLPLIQTLQSTRSSPLPQILAFELRSSSHPTNLWFVAWSGATSSSSSAIEVSKQFAECISLPNHGTVQVRAASNLAHASLVTIEPLTEDDWEILELNSEQAEAVILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKKAVVQLMPGTEVAVAPKRRKRISDSAGDSRLESHDKGHTAKMLLRIQDPGGLCHTSTHVKGVELHIGLTSVAFVHPETAKHFRFNMLQLVSIVPRISKENANISRTNIMKAKGGSTVNEVENGSLADKKEHRQAIVHLLFSESVAAGHVMLAKSLRLYLRAGLHSWVYLKACDIILEKNIPSISLCPCKFKLLRQDNTIEKDGLEVFHGHENHLNGKLLAKSTPSAFVDTLDWSINNEVVAALSDESNHKVEEEAENQSQNQKGLQSLVRLWYIAQLEAITSLAGIEVSSLVLGSKTLLHFELSCYKLGSNGKVPRAYNSSENSGKTAETLFILDFGDEYLHHGKLGAYEVALGESLNNINAVDLKLFEGMKLGDPVSIHSVDERASEEHISSDVSFPSWMEKPASDVINRMLVLLSSASSLWFGSCNFPLPGHVLIYGPSGSGKTLLSRTVANSLENHKDILTHIIFVPCSKLALEKVSIIRQELANHVAEALNHAPSIVIFDDLDSIISTSDSEGSQSSMSVAGLADFLVDIIDEYGEKRRKSCGFGPVAFIASIQSLEKIPQSLSSSGRFDFHVQLLAPAASERRAMLKHEIQRRHLRCGDDILLDVAVKCDGYDGYDLEILVDRTVHAAVWRFLPCNAANEHESPALLREDFTQAMHDFLPVAMRDITKSASDGGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFAKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWQERLEILTVLSRKLPMAHDIDLATVAKMTEGFSGADLQALLSDAQLAAVHDVLENADASEPEKTPIITDALLKLTASKARPSVSDEEKRRLYSIYSQFLDSKRSVAAQSRDAKGKRATLA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1174 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1098 IPR027417 -
Dod04g1174 1130 PANTHER AAA-FAMILY ATPASE 3 1127 - -
Dod04g1174 1130 ProSitePatterns AAA-protein family signature. 977 995 IPR003960 GO:0005524|GO:0016887
Dod04g1174 1130 SUPERFAMILY ADC-like 10 89 IPR009010 -
Dod04g1174 1130 Gene3D - 94 173 - -
Dod04g1174 1130 SUPERFAMILY Cdc48 domain 2-like 95 172 IPR029067 -
Dod04g1174 1130 SMART AAA_5 587 739 IPR003593 -
Dod04g1174 1130 SMART AAA_5 873 1009 IPR003593 -
Dod04g1174 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 817 IPR027417 -
Dod04g1174 1130 Gene3D - 838 1100 IPR027417 -
Dod04g1174 1130 CDD AAA 588 735 - -
Dod04g1174 1130 Pfam Peroxisome biogenesis factor 1, N-terminal 99 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Dod04g1174 1130 Gene3D - 557 738 IPR027417 -
Dod04g1174 1130 Pfam AAA+ lid domain 1029 1064 IPR041569 -
Dod04g1174 1130 Gene3D - 739 819 - -
Dod04g1174 1130 CDD AAA 843 1006 - -
Dod04g1174 1130 PANTHER - 3 1127 - -
Dod04g1174 1130 Gene3D - 1008 1087 - -
Dod04g1174 1130 Pfam ATPase family associated with various cellular activities (AAA) 591 734 IPR003959 GO:0005524|GO:0016887
Dod04g1174 1130 Pfam ATPase family associated with various cellular activities (AAA) 877 1004 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1174 Dod-Chr4 32398231 32412065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1174 591 794 Calmodulin-binding Proteins AT3G56690 27.358 4.58e-07 52.4