Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1172 ATGACTACTCCCAGGTCAAGCTCAAGAGTGAACATTGCAGGTAGTTCAGGAGTTGCAGCAGAAAAGAGAGCCCCATTACAGCCACTGCCAGGGGATGAGATTAAGCCACTTTCAGGAAATCCATACTATGACGTGATTCTTCCAAATTCAGCTGTTGGTCCTGGTCGCTATAACATGGGTCCGGTGGCCAGCTTAAAACTTCCTTTTGCTGAGATCCCCACTGTTCTCAACTGCAGAGGCAAGAGCTGGGACATGATGTATCTTGGAAGAGCCGTGAGTCGCAAGTTCAACTATGGAGGCTGGAAAAAGTTTGCTGAAGATAATCGTTTGAAGGTAGGAGACGCATGCATTTTTGAACTCATGGAAAGCAGTCGAGAGAAACTCGTTTTCGATGTTCAAATTCTTAGAGGTGACATCCCCTCAATATTTCTTGAAAGGGAAGAGACCATTGGTAACGGTGCAGAAGATCCAATTATCATTGACTAG 486 0.4547 MTTPRSSSRVNIAGSSGVAAEKRAPLQPLPGDEIKPLSGNPYYDVILPNSAVGPGRYNMGPVASLKLPFAEIPTVLNCRGKSWDMMYLGRAVSRKFNYGGWKKFAEDNRLKVGDACIFELMESSREKLVFDVQILRGDIPSIFLEREETIGNGAEDPIIID* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1172 161 SMART B3_2 33 138 IPR003340 GO:0003677
Dod04g1172 161 MobiDBLite consensus disorder prediction 1 25 - -
Dod04g1172 161 SUPERFAMILY DNA-binding pseudobarrel domain 40 136 IPR015300 -
Dod04g1172 161 CDD B3_DNA 74 136 IPR003340 GO:0003677
Dod04g1172 161 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 23 148 - -
Dod04g1172 161 Pfam B3 DNA binding domain 74 132 IPR003340 GO:0003677
Dod04g1172 161 ProSiteProfiles B3 DNA-binding domain profile. 74 138 IPR003340 GO:0003677
Dod04g1172 161 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 148 IPR044837 -
Dod04g1172 161 Gene3D - 32 138 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1172 Dod-Chr4 32373947 32380290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1172 75 125 REM Transcription Factor Family AT4G31680 37.255 1.39e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod04g1172 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1172 - - adu:107474771 151.369