Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1171 ATGACTGGTCCAAGGCCAAGCTCAAGAGATTTTGCAGTGAACATTGCAAGTAGTTCAGGAGTTGCAGCAGAAAAGAGAGCCCCATTACAGCCACTGCCAGGGGATGGGATTAAGCCACTTTCAGGAAATCCATACTATGAAGTGATTCTTCCAAAATCAGCAGTTGGTCCTGGTCATTATAACATGAGTCCTGTGGCCAGCTTGAAACTTCCTTCTGCTGAGATCCCCACTGTTCTCAACTACGGAGGCAAGAGCTGGGACCTGATGTATCATGGAGGAGCCGCAGGTCGCAAGTTCTTTAACTGTGGAGGCTGGAGAAAGTTTGCTGAAGATAATTGTTTGAAGGTAGGAGACGCATGCATTTTTGAACTCGTGGAGAGGAGTCGAGAGAAACTCGCCTTTGATGTTCAAATTCTTAGAGGTGACATCCCCTCAATGTTTCTTGAGAGGGAAGGGACCATTGGCAGCAGTGCAGAAGATCCAATTATCATTGACTAG 498 0.4679 MTGPRPSSRDFAVNIASSSGVAAEKRAPLQPLPGDGIKPLSGNPYYEVILPKSAVGPGHYNMSPVASLKLPSAEIPTVLNYGGKSWDLMYHGGAAGRKFFNCGGWRKFAEDNCLKVGDACIFELVERSREKLAFDVQILRGDIPSMFLEREGTIGSSAEDPIIID* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1171 165 CDD B3_DNA 44 140 IPR003340 GO:0003677
Dod04g1171 165 SUPERFAMILY DNA-binding pseudobarrel domain 43 140 IPR015300 -
Dod04g1171 165 Pfam B3 DNA binding domain 77 135 IPR003340 GO:0003677
Dod04g1171 165 ProSiteProfiles B3 DNA-binding domain profile. 77 142 IPR003340 GO:0003677
Dod04g1171 165 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 152 IPR044837 -
Dod04g1171 165 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 26 152 - -
Dod04g1171 165 SMART B3_2 61 142 IPR003340 GO:0003677
Dod04g1171 165 Gene3D - 37 142 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1171 Dod-Chr4 32353598 32355471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1171 78 131 REM Transcription Factor Family AT4G31650 38.889 2.46e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod04g1171 B3 5.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1171 - - adu:107474771 148.288