Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1170 ATGCTGGGTGGCCTCTACGGAGACCTTCCTCCACCGTCTTCGGCGGAGGAAGACAAACCCACCACCAACACCACCACCGTCTGGTCCACCAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCGGCCTCCGCGGTCCCCCCTCCCCAAACCCTCCTCCGATCCCAACACAAGCCCAAACCCCCCACCACCACCACCTCCTCCTCCCCCCTTCCCAAAACCCCCTCAATCCCCGCCGCACCGCCGCCGCCGGTGCTCCCCGACGACGCGCCTCTCCAGCCAGCCCTAGTCGGCGTCCAGTCGACGGTAATCGAAGAGTACGACCCCGCCAGGCCGAACGACTACGAGGAGTACCGCCGGGAACGGAAGCGGAAAGCGAGGGAGGCGGAGATGATGAAGGAGCTGGAGCGGCGGCGCCAGGAGGAGGAGGAGAGAGAGAGAAGAGACAGAGAGGAAAGAGAAAGGGAGAGGGAGAGGGAGAGGGATTACGGCGGCGGTGGTGGTGGTGATTCTAGGTTGAATATTTCCGGCGAGGAGGCGTGGAGGAGGAGAGCCGCGATGAGCGGCGGTGGAGGTGGCGGCGGGGCAGTGCCGAGATCGCCGTCGCCGCCGGGGAATGTGGATGGGTTTAGCATTGGGAAGTCGGAGACGGGAGGGTTGGGGCTTGGTGCCGGCGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAGGGGCTTGGGAAACAGGAGCAAGGGATCACTACTCCTTTGATGGCGAAGAAGACTGATAGAAGAGCTGGGGTTATTGTGAATGCTAGTGAGAATAGTAGTAGTAAGAATGAGAAGAAGGTTAAGAGTGTGAATTTCAATGGGGTGCCTACTAGGGTGCTGTTGCTTAGGAACATGGTGGGTCCTGGCGAGGTAGATGATGAGCTAGAAGATGAAGTAGGGTCAGAATGTGCCAAGTATGGGACCGTAACTCGGGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCTGCCGATGAAGCGGTAAGAATATTTGTGCAGTTTGAGAGATCAGAAGAAACAACTAAAGCGTTTGTTGATCTTGGTGGTCGGTACTTTGGAGGTAGAGTGGTGCATGCCTCATTTTATGACGAGGATAAGTTCAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGTTTCCCCTGA 1203 0.5786 MLGGLYGDLPPPSSAEEDKPTTNTTTVWSTSTKMAPATLRKPASAVPPPQTLLRSQHKPKPPTTTTSSSPLPKTPSIPAAPPPPVLPDDAPLQPALVGVQSTVIEEYDPARPNDYEEYRRERKRKAREAEMMKELERRRQEEEERERRDREERERERERERDYGGGGGGDSRLNISGEEAWRRRAAMSGGGGGGGAVPRSPSPPGNVDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASENSSSKNEKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERSEETTKAFVDLGGRYFGGRVVHASFYDEDKFSKNELAPMPGEIPGFP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1170 400 PIRSF SPF45 3 396 IPR040052 GO:0045292
Dod04g1170 400 MobiDBLite consensus disorder prediction 16 37 - -
Dod04g1170 400 SMART rrm2_1 296 377 IPR003954 GO:0003676
Dod04g1170 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 381 IPR000504 GO:0003723
Dod04g1170 400 SUPERFAMILY RNA-binding domain, RBD 297 384 IPR035979 GO:0003676
Dod04g1170 400 MobiDBLite consensus disorder prediction 1 225 - -
Dod04g1170 400 MobiDBLite consensus disorder prediction 74 90 - -
Dod04g1170 400 SMART G-patch_5 225 271 IPR000467 GO:0003676
Dod04g1170 400 MobiDBLite consensus disorder prediction 109 166 - -
Dod04g1170 400 PANTHER SPLICING FACTOR 45 SPF45 1 391 IPR040052 GO:0045292
Dod04g1170 400 MobiDBLite consensus disorder prediction 56 73 - -
Dod04g1170 400 Gene3D - 291 389 IPR012677 -
Dod04g1170 400 ProSiteProfiles G-patch domain profile. 227 273 IPR000467 GO:0003676
Dod04g1170 400 CDD RRM_UHM_SPF45 293 389 IPR034653 -
Dod04g1170 400 Pfam G-patch domain 230 269 IPR000467 GO:0003676
Dod04g1170 400 Coils Coil 115 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1170 233 268 C2H2 Transcription Factor Family AT5G26610 61.111 1.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1170 K12840 - gmx:100800998 474.167