Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1128 ATGTACCACAAACCAAAACTAAGCCTCTTGAATGGGAAGATGGTGAACAAGAGAAAAGAAAGGGAAGGTGAAGGTGAAGAGGAGAAAACTGAATGGGACCAGTTAAGGGAAGAAGCAGCATCAGTGGCAGCTGCTCTACTTGGAGCAAGAAGAGCAAGGAAACGTTACATTGGGGTGCGCCAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATTAGGCTATGGTTAGGCACTTATGACACTGCTGAGGAGGCTGCTAGAGCCTATGATGAAGCAGCTCGCTTGCTTCGGGGTGCTAACACCCGCACAAATTTCTTTCCATGCCAAAATCCTCATTCTACTCCTGCTCTCCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACATTGCCTCTTCTTGCATGGTTACTACTAATACTACTCCTCCCCCTCCTTTTCCTAGTAACCATTATGAGCAACAAACAAAAGCAGAACCAGAACCCCAATGTTTTTTTCAGCAAGTAGAACAACCCCACCTAGAAAATTTTCTAGATATGGAGGGAAATGGGATTAATGTTGCAGAAAGTTATGGTGATGGTGTTAGTTATGGTTCTGCTGCCACAATTACTACTTGTGGCAGAAGCAGTGGAACTAATGAAGCAAATTTTGACCAAGTGGGTTGTAGAGAGAATTTAAGATTGGAGGGTGATTGTGCTGACAATATTGTTGATGATGGAAACAATCAGAATGTGAGCGCTAAAGGAGAGTTTGAAGACTGTGAAGTTGGGTTCATTGACTTCCAGTTTTTGGACACTGTAGGATCATTGAGTTATTCTTCTTCTCCATTTGAGATAGCTGAGGAAATGGTGGGGCCAATGGTGGAAGAGAAATTTGATGTGGATGATTCACCATTACTTAGAGAAACTCTGAGGATGAAGTATGAACGTAAATTCTCGGCATGTCTTTACACCTTCATTGGCGTTGCTGAGTGTTTGAGGCTACAGGTTGGACCTGAATAA 1029 0.4354 MYHKPKLSLLNGKMVNKRKEREGEGEEEKTEWDQLREEAASVAAALLGARRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEEAARAYDEAARLLRGANTRTNFFPCQNPHSTPALPPKIAKLLLLRLKARNIASSCMVTTNTTPPPPFPSNHYEQQTKAEPEPQCFFQQVEQPHLENFLDMEGNGINVAESYGDGVSYGSAATITTCGRSSGTNEANFDQVGCRENLRLEGDCADNIVDDGNNQNVSAKGEFEDCEVGFIDFQFLDTVGSLSYSSSPFEIAEEMVGPMVEEKFDVDDSPLLRETLRMKYERKFSACLYTFIGVAECLRLQVGPE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1128 342 CDD AP2 54 111 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 MobiDBLite consensus disorder prediction 13 31 - -
Dod04g1128 342 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 MobiDBLite consensus disorder prediction 1 31 - -
Dod04g1128 342 SUPERFAMILY DNA-binding domain 55 111 IPR016177 GO:0003677
Dod04g1128 342 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Dod04g1128 342 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Dod04g1128 342 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 14 341 - -
Dod04g1128 342 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1128 Dod-Chr4 31856498 31857526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1128 53 111 AP2-EREBP Transcription Factor Family AT5G19790 77.966 3.06e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g1128 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1128 K09286 - gmx:100793940 343.584