LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1122	ATGAGCTCCGGCGGCGGCTCTTCCGGCGGCAGCTCCAGCAACACGGAGGAAGGCAAGCAGAAGGAGAAGGCTAGGGTGAGCCGCACCTCCTTGATACTGTGGCACGCACACCAAAACGACTTCGCTGCGGTGCGCAAGCTCCTCCAGGAGGATCCGTCGCTGGTGAAGGCCAGAGACTACGACAACCGCACCCCTCTCCACGTGGCGTCCCTCCACGGCTGGCTCGAGATCGCCACCTGCCTCATCGAGTTCGGCGCCGACGTCAACGCCCAAGATCGATGGAAAAACACCCCTCTTGCTGATGCTGAAGGAGCTCGCAAGACTCCTGTGATCGAGCTCTTGAAATCGCACGGGGGATTGTCTTATGGACAAAGTGGAAGCCATTTTGAAGCGAGGCCAGTTCCGCCGCCGTTGCCTAACAAGTGTGATTGGGAGGTTGACCCTTCCGAGATCGACTTCTCTAATTCCACGCGTATTGGAAAGGGATCTTTTGGTGAGATTCTAAAAGCCCATTGGCGTGGGACACCGGTTGCTGTCAAACGCATTCTTCCATCTCTTTCAGATGATAGATTGGTGATTCAGGATTTCAGGCATGAGGTCAATTTGTTAGTGAAACTTCGACACCCCAATATAGTTCAATTTCTTGGAGCTGTTACTGACAGGAATCCCCTTATGCTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGACAAAGGTTCACTTAGTCCTTCAACAGCTATCAACTTTTCCATGGATATTGCCAGAGGAATCGCCTATCTTCACAATGAACCAAATGTCGTAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATACTAGTGCCGATCATTTAAAAGTGGGAGATTTTGGATTGAGTAAGATTATCAGGGTCCGAAGTTCTCATGATGTATACAAGATGACTGGTGAAACAGGGAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTACGAGGTAATTCTTCTTACCTTAAAAAGTGTTTGGAAGAGGTTTATGGGGAGGGAGAGGGATGGCTATCGAGGGATGCCAAAACCCCTCGTGGCATCTGCAACAGTGAATAATGTGACCCCCCAAATTGGGGAGTCTAATAGTGACCCTACTTGTGCCCTTCCCTTCCCTTCCTCAACTACCAAACTCCAGAGTCTCCCACAATCCACTCTACTCCTCACCTATCTTTTCTATTCCATTAATGACTTTTCTTTTCCACCCTCTACAAAACTCTCAAACATAGCCTAA	1329	0.4831	MSSGGGSSGGSSSNTEEGKQKEKARVSRTSLILWHAHQNDFAAVRKLLQEDPSLVKARDYDNRTPLHVASLHGWLEIATCLIEFGADVNAQDRWKNTPLADAEGARKTPVIELLKSHGGLSYGQSGSHFEARPVPPPLPNKCDWEVDPSEIDFSNSTRIGKGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRNPLMLITEYLRGGDLHQYLKDKGSLSPSTAINFSMDIARGIAYLHNEPNVVIHRDLKPRNVLLVNTSADHLKVGDFGLSKIIRVRSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEVILLTLKSVWKRFMGRERDGYRGMPKPLVASATVNNVTPQIGESNSDPTCALPFPSSTTKLQSLPQSTLLLTYLFYSINDFSFPPSTKLSNIA*	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1122	442	SUPERFAMILY	Protein kinase-like (PK-like)	152	352	IPR011009	-
	Dod04g1122	442	ProSitePatterns	Protein kinases ATP-binding region signature.	159	180	IPR017441	GO:0005524
	Dod04g1122	442	PANTHER	SERINE/THREONINE-PROTEIN KINASE STY8-LIKE	16	351	-	-
	Dod04g1122	442	ProSiteProfiles	Protein kinase domain profile.	153	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod04g1122	442	ProSiteProfiles	Ankyrin repeat region circular profile.	61	93	-	-
	Dod04g1122	442	Gene3D	-	7	126	IPR036770	-
	Dod04g1122	442	MobiDBLite	consensus disorder prediction	1	15	-	-
	Dod04g1122	442	SMART	serkin_6	153	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod04g1122	442	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	16	351	-	-
	Dod04g1122	442	Gene3D	Transferase(Phosphotransferase) domain 1	233	393	-	-
	Dod04g1122	442	ProSiteProfiles	Ankyrin repeat profile.	61	93	IPR002110	GO:0005515
	Dod04g1122	442	SMART	ANK_2a	61	90	IPR002110	GO:0005515
	Dod04g1122	442	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	272	284	IPR008271	GO:0004672\|GO:0006468
	Dod04g1122	442	MobiDBLite	consensus disorder prediction	1	24	-	-
	Dod04g1122	442	Gene3D	Phosphorylase Kinase; domain 1	137	232	-	-
	Dod04g1122	442	Pfam	Ankyrin repeats (3 copies)	28	92	IPR002110	GO:0005515
	Dod04g1122	442	SUPERFAMILY	Ankyrin repeat	32	118	IPR036770	-
	Dod04g1122	442	CDD	STKc_MAP3K-like	159	360	-	-
	Dod04g1122	442	Pfam	Protein tyrosine and serine/threonine kinase	156	359	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1122	Dod-Chr4	31812254	31818970	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1122	6	351	MAP Kinase Kinase Kinase	AT1G14000	82.659	0.0	597

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Dod04g1122		PK_Tyr_Ser-Thr	1.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1122	-		-	adu:107481197	648.277