Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1118 ATGGCTACTATCTTTTCTGTGTGTTCAGGTTCTTCTGCTTTTTCTTCCCCTTGCAGCACTTCTCACAGCAGGGGCCTGTCCTTGTTGTCCAAAGGGTCACTGCTTCACCCCAAGAGGCCTATCTCTGCAAAGTCCCTTGCTTCTTTGGAAACTGACATATCACTGCCACCTGCAGTTCACACCTTTTGGCAGTGGATGAAAGAAGAAGGTGTTGTCTCTGCAAAGACCCCAGTGAAGCCTGGTGTGGTCCCTGAAGGCCTTGGACTAGTTGCCGTCAAAGACATCTCCAGAAATGAGGTTGTTCTGCAGGTTCCCAAGAGGCTTTGGATAAACCCAGATGCAGTGGCAGCTTCAGAGATTGGGAATGTGTGTAGTGGGCTGAAGCCTTGGTTGTCTGTTGCATTGTTTCTCATAAGGGAGAGGTCAAGGGAGGAATCTCTTTGGAAGCACTACTTCAGCATTCTGCCAAAGGAAACTGATTCTACTATATATTGGTCAGAGGAGGAGCTCTCAGAGCTTCAAGGTACTCAACTTCTGAACACAACATTGGGTGTGAAAGAATATGTGCAGAGTGAATTCCTGAGACTGCAAGAAGAAATCATACTCCCTAATAAGGAGCTATTCCCTTCTCCTATAACACTGGATGACTTCTTCTGGGCATTCGGTATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAACGAAAATCTGGTTGTTATTCCACTAGCAGACTTGATAAACCACAGTGCCAGTGTAACTACAGAAGATCATGCTTATGAAGTTAAAGGAGCAGCAGGCCTTTTCTCTTGGGATTACCTATTCTCCCTAAGGAGCCCCCTTTCTGTCAAGGCTGGGGACCAGGTATATATCCAATATGATTTGAAGAAAAGCAATGCCGAGTTGGCTCTAGACTACGGTTTCATCGAACCAAATGCAGATCGTAATGCATATACCTTGACATTGGAAATACCTGAGTCAGACCCCTTTTATGATGATAAACTAGACATTGCTGAGACCAATGGTTTTGGTGAGACGGCATACTTCGACATCTTCTACAACCGTCCACTCCCACCAGGTGACAACGAGGAGCTATTATGCCAAGTGGTTCGAGACGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGACAACAAGTTAAAGGAAACAAAACTAGATTCAAGGCTTGCAATGGCAGTTGGAATAAGAGAAGGGGAGAAGAGGGTCCTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAACTGGAATTGGACCAGTTAGAATACTATCAAGAAAGGAGGCTCAAGGACCTTGGTCTCTGCGGAGAAAGTGGTGACATCCTTGGGGACCTTGAAAAGTTCATGTAA 1377 0.4568 MATIFSVCSGSSAFSSPCSTSHSRGLSLLSKGSLLHPKRPISAKSLASLETDISLPPAVHTFWQWMKEEGVVSAKTPVKPGVVPEGLGLVAVKDISRNEVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLSVALFLIRERSREESLWKHYFSILPKETDSTIYWSEEELSELQGTQLLNTTLGVKEYVQSEFLRLQEEIILPNKELFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSASVTTEDHAYEVKGAAGLFSWDYLFSLRSPLSVKAGDQVYIQYDLKKSNAELALDYGFIEPNADRNAYTLTLEIPESDPFYDDKLDIAETNGFGETAYFDIFYNRPLPPGDNEELLCQVVRDACKSALAGYHTTIEEDNKLKETKLDSRLAMAVGIREGEKRVLQQIDEIFKEKELELDQLEYYQERRLKDLGLCGESGDILGDLEKFM* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1118 458 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 360 450 - -
Dod04g1118 458 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 38 353 - -
Dod04g1118 458 SMART set_7 74 299 IPR001214 GO:0005515
Dod04g1118 458 Pfam SET domain 86 292 IPR001214 GO:0005515
Dod04g1118 458 Gene3D - 309 358 IPR036464 -
Dod04g1118 458 Gene3D - 359 437 IPR036464 -
Dod04g1118 458 Pfam Rubisco LSMT substrate-binding 360 413 IPR015353 -
Dod04g1118 458 Gene3D set domain protein methyltransferase, domain 1 56 308 - -
Dod04g1118 458 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 360 450 - -
Dod04g1118 458 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 38 353 - -
Dod04g1118 458 ProSiteProfiles SET domain profile. 69 293 IPR001214 GO:0005515
Dod04g1118 458 CDD SET_RBCMT 70 308 IPR044431 GO:0016279|GO:0018022
Dod04g1118 458 PIRSF RMT_SET 359 457 IPR011192 GO:0009507|GO:0030785
Dod04g1118 458 PIRSF RMT_SET 1 359 IPR011192 GO:0009507|GO:0030785
Dod04g1118 458 SUPERFAMILY SET domain 56 313 IPR046341 -
Dod04g1118 458 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 456 IPR011192 GO:0009507|GO:0030785
Dod04g1118 458 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 316 451 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1118 Dod-Chr4 31789515 31792118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1118 59 248 NAC Transcription Factor Family AT3G56570 28.500 5.95e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod04g1118 SET 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1118 K00592 - gmx:100818113 730.709