Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1113 ATGGGCAGGTCACCATGCTGTGAGAAGGTGGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAAAAGCTTGTGGCTTACATTGAACAACATGGCCATGGAAGCTGGCGTGCATTGCCTGCCAAAGCTGGGCTTCAAAGGTGTGGGAAGAGCTGCAGACTGAGGTGGACTAACTACCTCCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATCATTCAACTTCATGCCCTTCTTGGAAACAGATGGTCAGCCATAGCAGCTCAACTTCCAAAGAGAACGGACAATGAGATCAAGAACTACTGGAACACACACCTAAAGAAAAGGCTAGCCAGAATGGGGATAGACCCCACAACCCACAGGCCAAAAACCGATGCCCTTGGTGGCTCCGCGGACTCCTCCTGCTCCCACTCCAAGGACGCAGCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCAGAAGCAAGACTGGTCAGAGAGTCCAAGCTGCAAGTCCAGAGCCACCAACAACCCACACAACAGCCACCACCAGCACGACTTGTCCTCAACAAGATCACAGCTCAACCATCGTTTCCACCTTGCCTTGACGTGCTCAAGGCATGGCAAAACTCATGGTCATCGAAGCCACAATCACTACCAACAACAACAACAACAACAAAAGACAACAACAACAACAACAAGATGCATAGCATGTATGCCATGATGCTCTCTTCTGATGACACCCTTCTAGAGTCTCCAACATCAACACTGTGCTTCCCAGGAAGCAACGTTATGCTCCCTATGGTATCCACCACCACCACTACTGTTGGGGTTGTCAATGAAAGTCTACTCATTACTCCTCCTCTCACCAATAACGTTAATGGCACAACCATGATGAAAGGAGGTAGCAGTAACAGTGGGAGCGATTCGTCATCATGGGGTTACTTAACCAAGCAGAACCCAGAAGGAGCAAAACATCAAGTACATAGTGATGAGAACATCGAGAGGGGAGTGGAGAGTAATAAATTGCGAGACGATGACATCATGGTGGCTGTGGAAGCATTTAGATCTTCTGCTGGTGGTGGAGGAGCATACGGCACTGTTGATGTCCCACTACTGTCCACTACAAGCGAAGTTGTGGCAGAAGAAGGACTCAACAATGATGCTATGACTTATGAATCCAATGACAGCTTGGCAATCATCAACGGGGACGGAATCAGCATGTGTGATGTCAGCCTCGAAGAGGAGAATAAGCATTACTGGAATGCCATACTCAACTTGGTGAATGATGCACAAGTCATGTTCTAA 1317 0.489 MGRSPCCEKVGLKKGPWTPEEDQKLVAYIEQHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLARMGIDPTTHRPKTDALGGSADSSCSHSKDAANLSHMAQWESARLEAEARLVRESKLQVQSHQQPTQQPPPARLVLNKITAQPSFPPCLDVLKAWQNSWSSKPQSLPTTTTTTKDNNNNNKMHSMYAMMLSSDDTLLESPTSTLCFPGSNVMLPMVSTTTTTVGVVNESLLITPPLTNNVNGTTMMKGGSSNSGSDSSSWGYLTKQNPEGAKHQVHSDENIERGVESNKLRDDDIMVAVEAFRSSAGGGGAYGTVDVPLLSTTSEVVAEEGLNNDAMTYESNDSLAIINGDGISMCDVSLEEENKHYWNAILNLVNDAQVMF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1113 438 CDD SANT 69 112 IPR001005 -
Dod04g1113 438 Gene3D - 13 66 - -
Dod04g1113 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod04g1113 438 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 434 - -
Dod04g1113 438 MobiDBLite consensus disorder prediction 303 335 - -
Dod04g1113 438 CDD SANT 16 61 IPR001005 -
Dod04g1113 438 Gene3D - 69 116 - -
Dod04g1113 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod04g1113 438 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod04g1113 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod04g1113 438 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 434 - -
Dod04g1113 438 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod04g1113 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod04g1113 438 MobiDBLite consensus disorder prediction 216 235 - -
Dod04g1113 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod04g1113 438 MobiDBLite consensus disorder prediction 119 146 - -
Dod04g1113 438 SMART sant 66 114 IPR001005 -
Dod04g1113 438 SMART sant 13 63 IPR001005 -
Dod04g1113 438 MobiDBLite consensus disorder prediction 303 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1113 Dod-Chr4 31693535 31695465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1113 1 271 MYB Transcription Factor Family AT3G01140 62.731 2.86e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g1113 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1113 K09422 - gmx:100809025 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1113 04 31693535 31695465 Dod04g1113 04 31693535 31695465 ECH
Dod04g1113 04 31693535 31695465 Dod02g2464 02 54232217 54235148 ECH