Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1111 ATGGAAACAAAGCCTCAGCAAGAAATGGCAGAAGAAGAGCACATGCTGCAGCACCTCAGATCCAGAGCCACAGAGCTCTTCCTCAGAGAAGAATGGAATGACTCCATTGAAGCCTACTCTCACTTCATCACCCTTTCCACACAGCACCGACACCTCCAAAAGGAGCATCACAAATCCCTCTGCATAGCACTCTGCAACCGCGCCGAAGCAAGGCTTCGGCTTCGAGACTTCCACTCTGCCTTACAAGACTGTGATCACGCCTTGGAGATCGATGCCACACACTTCAAGACCCTCCTCTGCAAGGGCAAGATCTTGCTCTGCCTTAACAGGTACTCATTGGCACTTGAATGCTTCAAAACCGCTATGCTTGATCCTCAAGCTGGTGGGAACTCTGAAATCATTAATGGGTATGTGGAGAAGTGCAAAAAGTTGGAGTTTTTGGCTAGGACTGGGTCCATGGACTTATCTGATTGGGTTTCAAATGGGTTTCGTGGGAAGGCTCCGGAGCTTGCAGAGTACATTGGTGCTGTGGAGATCAGAAAATCTGAGATCAGTGGCCGTGGCTTGTTTGTGACAAAGAACATTGATGCTGGATCTTTGATCTTGGTCACAAAAGCAATAGCCATGGAGAGGAGCATATTGGCAGGTAAAGACTTGAGTGAGGATGCCCAGTTAGTTATGTGGAGGAATTTCATTGAGAAAGTTGCTGAATTTGCAAGGAAGTGCCATAAAACAAGGGGTTTGATTGGTGTGTTGTCAAGTGGGGAAGATGATGAGGATGCACTTGATGCTCCTGATATAAGTCTGTTTAGGCCTGAGAGTGTGGGGAATGTGCATTCTTATGGGGAGGTTGATATGGGGAAGTTGCTGGCCGTATTGGATGTTAATTCACTCACTGAGGATGCAGTTTCAGCCAATGTGCTGAGGAAGAACAATGATTTCTATGGTGTTGGCTTGTGGCTGCTTCCTTCCTTCATCAACCATTCATGTTGTCCCAATGCAAGGAGATTGCATGTTGGGGACTGCTTGATAGTTCATGCTTCCAAAGATCTCAAGGCTGGTGAAGAGGTCACTTTTGCATACTTGGACCCTTTGTGTCCTTTGAACAAGCGGAGGGAGATGTCGATGACATGGGGGATTCATTGCAAGTGCAAGAGGTGCAGGTTTGAGGGGGAGATCTTCTCCAAACAAGAGGTGAAGGAGATTGAGATTGGACTTGAAAGAGGGATGGATGTAGGTGGTGTGGTGTATAAATTAGAGGAACACATGAGGAGGTGGAAGGTGAGGGGGAAAGAGAAAGGGTTTTTGAGGGCATCATTTTGGTCTGCATATTCTGAGACTTATAGGTCAGATAGGTCTATGAAGAGGTGGGGAAGGAGGATTCCGGCAATGGATGCGGTGGTTGATAGCATCGTTGATGTGGTGGGAGGTGATCACAGGTTACTTAAGATCAAGATGGAGGAGCTGAAGAAAAATGGTGGCGGCCATGTGGAGATGGAGAAAGCCTTGAAGCTAGCTAGAGATGTGTATGGGAAAGTGGTGAAAAGGCAAGCAATGAGGACCCTTCTTGAGCTCAGCATTGGTGATTGA 1590 0.473 METKPQQEMAEEEHMLQHLRSRATELFLREEWNDSIEAYSHFITLSTQHRHLQKEHHKSLCIALCNRAEARLRLRDFHSALQDCDHALEIDATHFKTLLCKGKILLCLNRYSLALECFKTAMLDPQAGGNSEIINGYVEKCKKLEFLARTGSMDLSDWVSNGFRGKAPELAEYIGAVEIRKSEISGRGLFVTKNIDAGSLILVTKAIAMERSILAGKDLSEDAQLVMWRNFIEKVAEFARKCHKTRGLIGVLSSGEDDEDALDAPDISLFRPESVGNVHSYGEVDMGKLLAVLDVNSLTEDAVSANVLRKNNDFYGVGLWLLPSFINHSCCPNARRLHVGDCLIVHASKDLKAGEEVTFAYLDPLCPLNKRREMSMTWGIHCKCKRCRFEGEIFSKQEVKEIEIGLERGMDVGGVVYKLEEHMRRWKVRGKEKGFLRASFWSAYSETYRSDRSMKRWGRRIPAMDAVVDSIVDVVGGDHRLLKIKMEELKKNGGGHVEMEKALKLARDVYGKVVKRQAMRTLLELSIGD* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1111 529 Pfam SET domain 186 361 IPR001214 GO:0005515
Dod04g1111 529 ProSiteProfiles SET domain profile. 175 362 IPR001214 GO:0005515
Dod04g1111 529 SMART set_7 175 368 IPR001214 GO:0005515
Dod04g1111 529 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 7 512 - -
Dod04g1111 529 SMART tpr_5 95 127 IPR019734 GO:0005515
Dod04g1111 529 SMART tpr_5 61 94 IPR019734 GO:0005515
Dod04g1111 529 SMART tpr_5 16 49 IPR019734 GO:0005515
Dod04g1111 529 Gene3D Tetratricopeptide repeat domain 11 145 IPR011990 GO:0005515
Dod04g1111 529 SUPERFAMILY SET domain 176 387 IPR046341 -
Dod04g1111 529 CDD SET_SMYD 290 387 - -
Dod04g1111 529 Gene3D SET domain 279 391 IPR046341 -
Dod04g1111 529 SUPERFAMILY TPR-like 18 122 IPR011990 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod04g1111 SET 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1111 - - mtr:MTR_4g082140 817.379