Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1108 ATGTGCATCATTTTGCCTCTTAACATTTGCTCCTCACTAGCTGCTAGCACCTCCTCCTTCGCCTCCTTAATACCGAAGATAATGGCTCTCATTGGGTTGATGTTGGTGACTCTTCTCACAATGTTCTCCTCAGCTTATGCTTATGGTGGAGGCTGGATCAATGCTCATGCTACCTTCTATGGAGGGGGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAGGGGTATGGAACAAACACTGCTGCTCTGAGCACTGCTCTTTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATCAGGTGTGTGAATGACAACAAGTGGTGCCTCCCTGGCTCCATTCTGGTCACTGCCACCAACTTCTGCCCACCAAACAATGCCTTGCCCAACAATGCAGGGGGCTGGTGCAACCCTCCTCTGCACCACTTTGATCTTGCTCAACCTGTCTTCCTGCACATTGCACAATATAAAGCTGGTATAGTGCCAGTGGCTTATAGAAGGGTGGCTTGCAGGAGAAGGGGAGGGATGAGGTTCACAATCAATGGACATTCCTACTTCAACCTAGTACTCATCACAAACGTTGGTGGTGCTGGGGATGTACATGCTGTGTCCATCAAAGGGTCAAGGACTGGTTGGATGGCAATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACAACCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACAACCAGTGATGGCCGTACTGTAGTCTCCAACAATGTTGCCCCAGCTGGATGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 828 0.506 MCIILPLNICSSLAASTSSFASLIPKIMALIGLMLVTLLTMFSSAYAYGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDNKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLHIAQYKAGIVPVAYRRVACRRRGGMRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWMAMSRNWGQNWQSNNNLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQFR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1108 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 182 IPR007112 -
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Dod04g1108 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Dod04g1108 275 Gene3D - 37 178 IPR036908 -
Dod04g1108 275 SUPERFAMILY PHL pollen allergen 179 271 IPR036749 -
Dod04g1108 275 SMART dpbb_1 87 172 IPR007112 -
Dod04g1108 275 PANTHER EXPANSIN-A15 32 274 IPR002963 GO:0009664
Dod04g1108 275 Gene3D - 182 274 IPR036749 -
Dod04g1108 275 Pfam Expansin C-terminal domain 183 260 IPR007117 -
Dod04g1108 275 SUPERFAMILY Barwin-like endoglucanases 38 200 IPR036908 -
Dod04g1108 275 PANTHER EXPANSIN 32 274 - -
Dod04g1108 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
Dod04g1108 275 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 109 120 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Dod04g1108 275 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Dod04g1108 275 Pfam Lytic transglycolase 87 172 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1108 Dod-Chr4 31566879 31568659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1108 28 275 Expansin Gene Family AT2G03090 80.242 2.05e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1108 - - gmx:100527059 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1108 04 31566879 31568659 Dod04g1108 04 31566879 31568659 ECH
Dod04g1108 04 31566879 31568659 Dod05g1750 05 42910375 42912608 ECH
Dod04g1108 04 31566879 31568659 Dod02g2469 02 54480547 54482571 ECH