Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1107 ATGGAACCTAACAATGCCATGGAGGATCAAGTATGGGAGACACAGTTAGCACTTAACCTTAACATTATACCCCTAATTGATTGCAAGATGGGCAGGGTAAAGCTAAAGATAAAGAGACTGGAGAACATGAATGGCCGCCAGGCAACTTATGCAAAAAGAAAGAATGGAATCATCAAAAAGGCTACTGAGTTATCTATACTCTGTGACATAGATATTATACTCCTCATGTTCTCACCATCTGGAAAGCCTTCATTGTGTAGGGGCAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGAAGTAAATATACAAGAATTTCTGGGCACAAGTAGCCAAACTATTGAGGACCTAGGTAATCAAGCCAGACTATTGCGGACTCATGTTTTAGAAGCACATAAGAAACTAAGCCACTGGAATGATTTTGATAAAATCAGCAATGTGGAACAACTAGGACAAATGGAAAATTCACTCAAAGAGTCTCTCAATCAAATTCGAACCCGTAAGGAAAATCTTAAAAAGCAACAACTTGTGTCTATGCAATGCAATAATCAGTTCAATGAGATGCATATTCCCTTCAGAATGGGTGCTGAGCAGCATCTCCAACCTCTACCATGGATTGCTAATGGTGACGGCCAACATATAGTTTTACCGGAGGACTCAAATTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCACATCATTTGGGAGCTACGCCAGTTATCTTGGCTCAAGTAGTAAAACTGATATTTCAAACTCTGGCCAAGAAAATGGTGTTCTTAGTGACTTGAGCAGTGCTGCTCCTTTGAGATTACCATTGAACGGGCAGTTTCCATACTTACCATACAATTTCAGTTTACTGAATGATTTCAAGTTCCAATCAGCTCCAGAGATCAATCCACATGAAAACCCCGTAGCTTATCATGTGAATGGAAGCTTTGAAGCCCCTAGACCTGGCTATGACTCTAACCATCATGGGTGGGCTTCCTCATCAGGCCCTTGTGCTGTTACTATGTTTGATGAGCACTTGTATGCACAGGCAAGTTTCCCTCAAGTGAACTTTGGCTTAACTTAG 1164 0.4124 MEPNNAMEDQVWETQLALNLNIIPLIDCKMGRVKLKIKRLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGRRSNFEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHEVNIQEFLGTSSQTIEDLGNQARLLRTHVLEAHKKLSHWNDFDKISNVEQLGQMENSLKESLNQIRTRKENLKKQQLVSMQCNNQFNEMHIPFRMGAEQHLQPLPWIANGDGQHIVLPEDSNLLLHKDVEGSASTSFGSYASYLGSSSKTDISNSGQENGVLSDLSSAAPLRLPLNGQFPYLPYNFSLLNDFKFQSAPEINPHENPVAYHVNGSFEAPRPGYDSNHHGWASSSGPCAVTMFDEHLYAQASFPQVNFGLT* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1107 387 ProSiteProfiles MADS-box domain profile. 30 82 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 Gene3D - 43 126 IPR036879 GO:0003677|GO:0046983
Dod04g1107 387 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 83 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 377 - -
Dod04g1107 387 SUPERFAMILY SRF-like 31 124 IPR036879 GO:0003677|GO:0046983
Dod04g1107 387 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 30 377 - -
Dod04g1107 387 CDD MADS 31 83 - -
Dod04g1107 387 Coils Coil 183 203 - -
Dod04g1107 387 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Dod04g1107 387 Coils Coil 106 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1107 Dod-Chr4 31554304 31563495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1107 30 380 Type I MADS-box Gene Family AT2G03060 46.859 1.51e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod04g1107 SRF-TF 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1107 - - lang:109356063 585.489