LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1107	ATGGAACCTAACAATGCCATGGAGGATCAAGTATGGGAGACACAGTTAGCACTTAACCTTAACATTATACCCCTAATTGATTGCAAGATGGGCAGGGTAAAGCTAAAGATAAAGAGACTGGAGAACATGAATGGCCGCCAGGCAACTTATGCAAAAAGAAAGAATGGAATCATCAAAAAGGCTACTGAGTTATCTATACTCTGTGACATAGATATTATACTCCTCATGTTCTCACCATCTGGAAAGCCTTCATTGTGTAGGGGCAGGCGCAGTAACTTCGAGGAGGTTATTGCAAAGTTTGCTCAACTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGATCATGAAGTAAATATACAAGAATTTCTGGGCACAAGTAGCCAAACTATTGAGGACCTAGGTAATCAAGCCAGACTATTGCGGACTCATGTTTTAGAAGCACATAAGAAACTAAGCCACTGGAATGATTTTGATAAAATCAGCAATGTGGAACAACTAGGACAAATGGAAAATTCACTCAAAGAGTCTCTCAATCAAATTCGAACCCGTAAGGAAAATCTTAAAAAGCAACAACTTGTGTCTATGCAATGCAATAATCAGTTCAATGAGATGCATATTCCCTTCAGAATGGGTGCTGAGCAGCATCTCCAACCTCTACCATGGATTGCTAATGGTGACGGCCAACATATAGTTTTACCGGAGGACTCAAATTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCACATCATTTGGGAGCTACGCCAGTTATCTTGGCTCAAGTAGTAAAACTGATATTTCAAACTCTGGCCAAGAAAATGGTGTTCTTAGTGACTTGAGCAGTGCTGCTCCTTTGAGATTACCATTGAACGGGCAGTTTCCATACTTACCATACAATTTCAGTTTACTGAATGATTTCAAGTTCCAATCAGCTCCAGAGATCAATCCACATGAAAACCCCGTAGCTTATCATGTGAATGGAAGCTTTGAAGCCCCTAGACCTGGCTATGACTCTAACCATCATGGGTGGGCTTCCTCATCAGGCCCTTGTGCTGTTACTATGTTTGATGAGCACTTGTATGCACAGGCAAGTTTCCCTCAAGTGAACTTTGGCTTAACTTAG	1164	0.4124	MEPNNAMEDQVWETQLALNLNIIPLIDCKMGRVKLKIKRLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGRRSNFEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHEVNIQEFLGTSSQTIEDLGNQARLLRTHVLEAHKKLSHWNDFDKISNVEQLGQMENSLKESLNQIRTRKENLKKQQLVSMQCNNQFNEMHIPFRMGAEQHLQPLPWIANGDGQHIVLPEDSNLLLHKDVEGSASTSFGSYASYLGSSSKTDISNSGQENGVLSDLSSAAPLRLPLNGQFPYLPYNFSLLNDFKFQSAPEINPHENPVAYHVNGSFEAPRPGYDSNHHGWASSSGPCAVTMFDEHLYAQASFPQVNFGLT*	388

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod04g1107	387	ProSiteProfiles	MADS-box domain profile.	30	82	IPR002100	GO:0003677\|GO:0046983
Dod04g1107	387	Gene3D	-	43	126	IPR036879	GO:0003677\|GO:0046983
Dod04g1107	387	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	39	83	IPR002100	GO:0003677\|GO:0046983
Dod04g1107	387	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	30	377	-	-
Dod04g1107	387	SUPERFAMILY	SRF-like	31	124	IPR036879	GO:0003677\|GO:0046983
Dod04g1107	387	SMART	madsneu2	30	89	IPR002100	GO:0003677\|GO:0046983
Dod04g1107	387	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1	30	377	-	-
Dod04g1107	387	CDD	MADS	31	83	-	-
Dod04g1107	387	Coils	Coil	183	203	-	-
Dod04g1107	387	PRINTS	MADS domain signature	32	52	IPR002100	GO:0003677\|GO:0046983

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1107	Dod-Chr4	31554304	31563495	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1107	30	380	Type I MADS-box Gene Family	AT2G03060	46.859	1.51e-102	306

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Dod04g1107		SRF-TF	1.7e-17	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1107	-		-	lang:109356063	585.489

Showing 1 to 1 of 1 entries

Previous1Next