Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1106 ATGGGAATGGTATATGCAGACATGGGTTCTCTTTCTCTTTGCTCCAACTACGGTGTGGTCTCAGCCGTTTCTTCATCTCAAGATTGTTATGCCTCTAAGGGCTTTCTGATGGATCAGAATAATAATGGCGGCAACACAAGCTGGGGTTTTCCTTTTGCTAGGGAGCTAGGCTTTGTTGCAAGGAACTTTGAGGAACACCCCAACAGTGATGATGTTGTGGAGGCTACTACTAAAGGGTCTGATAGCAGCGACGAGGTTGGGGAAAACAGTGAGAAAATGAACCATACTGCTAACTTCAACGATGAGAACCCTAATGAAAATTCCGGGAGCGGCAAGGAGGGAGATACCGGACAGTCCAAGCTTTGTGCAAGGGGACACTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTGGTTGCTCTTTATGGCCCTCAGAACTGGAACCTTATAGCTGAAAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCAAGGATCAACAGGAGAGCTTTCACTGAAGAAGAGGAAGAGAGGTTGATGCAGGCTCATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTCTTTCCTGGGAGAACAGATAACGCTGTCAAGAACCACTGGCATGTTATAATGGCCAGGAAGTACAGAGAACAATCAAGTGCTTATAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAATGGAGGAAAATACAAGCTTTGTCTCTAAAGATGCAGCCGCAGGGACAGAACCACCGCCCTATTGTCTCAACCTCCCCAATGGAGGGCTAAGCAATAGTGTGGCAAGTTTCCCTTATGCACCCTTCCATGGTGCTGTGGGTGGGGTTGAGTTTGCTGGCTTGAATGGCTCACCCCACATGACTGGTGGGAGAGAAGCTGTCTCTAGCACCAAGCAGGCCCCTCCTTTTACTGCCTTGTATGCTCAACAGACACCATTTGATTTCTTCTCTGGTGGTAGAAGCAATGACATGGTGGGTGAGTATTTTAACCAGACCAGATATTGGGAAAGGCCAAGTGATGTACCTCCTCATCATCAACTAGCACCTGGTTTCTATCCACATTATCCAGAGTATCCGGTGCCAATGCAACAGCAAAACAATCACAATAGTTTTTTAAGCTTCTCAAATTCCACAGCAGCACAGGTGTTGGCCAGTCAAGCCTCATTGTCATCCGTGGCAGAACACAGAGATCAAGCCCTGACCAGTGATCACCACCCAGATGCAATTCCACCTCCATTTATTGATTTCCTTGGGGTAGGAGCCACATGA 1320 0.478 MGMVYADMGSLSLCSNYGVVSAVSSSQDCYASKGFLMDQNNNGGNTSWGFPFARELGFVARNFEEHPNSDDVVEATTKGSDSSDEVGENSEKMNHTANFNDENPNENSGSGKEGDTGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMEENTSFVSKDAAAGTEPPPYCLNLPNGGLSNSVASFPYAPFHGAVGGVEFAGLNGSPHMTGGREAVSSTKQAPPFTALYAQQTPFDFFSGGRSNDMVGEYFNQTRYWERPSDVPPHHQLAPGFYPHYPEYPVPMQQQNNHNSFLSFSNSTAAQVLASQASLSSVAEHRDQALTSDHHPDAIPPPFIDFLGVGAT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1106 439 ProSiteProfiles Myb-like domain profile. 171 221 IPR001005 -
Dod04g1106 439 MobiDBLite consensus disorder prediction 67 120 - -
Dod04g1106 439 CDD SANT 178 218 IPR001005 -
Dod04g1106 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 170 IPR017930 -
Dod04g1106 439 PANTHER MYB PROTEIN-RELATED 1 439 - -
Dod04g1106 439 SMART sant 123 172 IPR001005 -
Dod04g1106 439 SMART sant 175 223 IPR001005 -
Dod04g1106 439 CDD SANT 127 168 IPR001005 -
Dod04g1106 439 Gene3D - 177 249 - -
Dod04g1106 439 ProSiteProfiles Myb-like domain profile. 124 170 IPR001005 -
Dod04g1106 439 PANTHER MYB TRANSCRIPTION FACTOR 1 439 - -
Dod04g1106 439 SUPERFAMILY Homeodomain-like 124 217 IPR009057 -
Dod04g1106 439 MobiDBLite consensus disorder prediction 92 115 - -
Dod04g1106 439 Pfam Myb-like DNA-binding domain 124 170 IPR001005 -
Dod04g1106 439 Pfam Myb-like DNA-binding domain 176 219 IPR001005 -
Dod04g1106 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 225 IPR017930 -
Dod04g1106 439 Gene3D - 124 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1106 Dod-Chr4 31509424 31511202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1106 80 241 MYB Transcription Factor Family AT1G69560 67.232 6.90e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g1106 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1106 K09422 - gmx:100810632 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1106 04 31509424 31511202 Dod04g1106 04 31509424 31511202 ECH