Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1097 ATGAGCGATCATCTGGTGCTGTACGTGGACCGCCTGGTGCGCCCCGTTGTGCCGGTGGAGCCGCTCGTTCAGCATCCCGCTCAGCCATCCCCGGAGCCCGATCCGGCGCCCATGGATGCGGCGGCGGGGCCATCCGGCTCTGCTCCTGCGGCGGCGGAGGAAGACGAGGACGGCGGTGGTGATGAGGAGGAGCCGCTGTTGCAGATAGCGGAGTGTCGCATTTGTCAGGACGAGGACAGCCTCAACAATCTCGAGGCACCCTGCGCCTGCAGCGGAAGTCTCAAGTATGCTCACCGAAAGTGCGTTCAGCATTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGCCATAAGCCCTATCAACCTGGTTATACTGCCCCACCACCACGTCCACATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACACCCTTGGACTTGCGTGATCCTCGTCTCTTGGCAATTGCTGAGGCAGAACGCCAATTCTTGGAAGCAGAATACGATGGATATGCCGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGTTCAGCTGCGCTAATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTGTCAGTCACCGATGGTGATGCTGATGATGACCCATCCACTTTCTTTTCTCTTTTCTTGCTTCGAGCTGCCGGATTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGAAGGCGACAGCGACAAGAGGCTGCAGCACTGGCGGCAACTCAAGTTGCTTTTGTTTTACAATCCGGGCAGCGTAGGGGTCTGCAATTTGCCATAACACCAGGACCAACAACAGTGAATGCACCCGAGGAACAAGTGTAG 876 0.5468 MSDHLVLYVDRLVRPVVPVEPLVQHPAQPSPEPDPAPMDAAAGPSGSAPAAAEEDEDGGGDEEEPLLQIAECRICQDEDSLNNLEAPCACSGSLKYAHRKCVQHWCDEKGDITCEICHKPYQPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDGDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAITPGPTTVNAPEEQV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1097 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 284 - -
Dod04g1097 291 MobiDBLite consensus disorder prediction 23 62 - -
Dod04g1097 291 CDD RING_CH-C4HC3_MARCH 72 118 - -
Dod04g1097 291 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 284 IPR033275 -
Dod04g1097 291 Coils Coil 160 180 - -
Dod04g1097 291 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
Dod04g1097 291 SUPERFAMILY RING/U-box 71 122 - -
Dod04g1097 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 127 IPR013083 -
Dod04g1097 291 MobiDBLite consensus disorder prediction 23 38 - -
Dod04g1097 291 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Dod04g1097 291 SMART ringv_2 71 118 IPR011016 GO:0008270
Dod04g1097 291 Pfam Protein of unknown function (DUF3675) 123 241 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1097 Dod-Chr4 31327369 31330030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1097 52 121 C3H Transcription Factor Family AT2G22120 36.986 7.45e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1097 - - ahf:112734090 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1097 04 31327369 31330030 Dod04g1097 04 31327369 31330030 ECH