Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1095 ATGGTGGCAGTTTCCTACAAGGAATGCCTCAAGAACCATGCGGCCAACATAGGTGGCCATGCACTTGATGGTTGCGGTGAGTTCATGGCTTCTTCCTCCACCAACCTCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGACCCTCCAGAGCCCTCCACCACCACCACCACAACCAACAACAATCACAACAACAACAATCCCACTTTTCTCAACTGCTTCTACTCTCCACCACCACCTCCTTCAGCTGCCGTCGCCACGGCACTGCCACCACCACCGCCTCAACCGCTCCCTCACCGTGCCATGAGCCAAAGCACGAGCCCAAGCCTCAGTTCTAGCCCCAGCCATAGTCCTAGCCCCATGTCAAGCCCTTCTTCACCACCGCCACTCTCACATGTTCCACCTTCTTACCATCATCATCATCATCAATCTTCTGCACCCCACATGCTTTTGGCACTTGGTAATGCCTATTCTGCTGTTGCACTGCCCTCATCTGATCATGAGCACCACCAACACATAAGGAACAGCTACTTCAGCAACAACAACAACTCTTCAATGGTGGTAAAGGGTCTTGAGAACCCAATGAGTGGTGGGAACAAGAAGAGGTACAGGACGAAGTTCAGCCAGGAGCAGAAGGAGAAGATGTACAGCTTCTCGGAGAGATTGGGTTGGAGAATGCAGAAGGGTGATGATGGGCTTGTGCAGGAGTTCTGCAATGATATTGGTGTCCCTAGAGGGGTCTTCAAGGTTTGGATGCACAACCACAAGAACACCTTCAAGAAGAGATCATCAGAACTAGTTGGAAACGCTCCCAATCAGAGTAACATTATTGATGAGAAGGTCAATAATAATGGGGACGATGATGACGACGACGACGACGATGACGATGGAAATCATGGGAATAATAGAGGAGGTGTTGGTGGTGGTGTTGGTGCTGGAGGATTTGATAGTGATATTAACAACCCTTACAACACCACCAATGGCAGCAACAATAGTGATATTCACAGAAGTGAAGATGGCTGTGTCAATGTTCATGTTCCCAGTCAATGGGTTGTCATCTTAATCTTCATCTGCCGAGAAGAAACTTAG 1116 0.5045 MVAVSYKECLKNHAANIGGHALDGCGEFMASSSTNLTDPRSLKCAACGCHRNFHRRDPPEPSTTTTTTNNNHNNNNPTFLNCFYSPPPPPSAAVATALPPPPPQPLPHRAMSQSTSPSLSSSPSHSPSPMSSPSSPPPLSHVPPSYHHHHHQSSAPHMLLALGNAYSAVALPSSDHEHHQHIRNSYFSNNNNSSMVVKGLENPMSGGNKKRYRTKFSQEQKEKMYSFSERLGWRMQKGDDGLVQEFCNDIGVPRGVFKVWMHNHKNTFKKRSSELVGNAPNQSNIIDEKVNNNGDDDDDDDDDDDGNHGNNRGGVGGGVGAGGFDSDINNPYNTTNGSNNSDIHRSEDGCVNVHVPSQWVVILIFICREET* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1095 371 MobiDBLite consensus disorder prediction 109 128 - -
Dod04g1095 371 MobiDBLite consensus disorder prediction 129 143 - -
Dod04g1095 371 MobiDBLite consensus disorder prediction 271 340 - -
Dod04g1095 371 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 4 273 - -
Dod04g1095 371 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 6 57 IPR006456 -
Dod04g1095 371 MobiDBLite consensus disorder prediction 272 289 - -
Dod04g1095 371 SUPERFAMILY Homeodomain-like 202 270 IPR009057 -
Dod04g1095 371 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 209 266 IPR006455 -
Dod04g1095 371 MobiDBLite consensus disorder prediction 82 108 - -
Dod04g1095 371 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 273 - -
Dod04g1095 371 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
Dod04g1095 371 Gene3D - 196 270 - -
Dod04g1095 371 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 6 57 IPR006456 -
Dod04g1095 371 MobiDBLite consensus disorder prediction 53 155 - -
Dod04g1095 371 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1095 Dod-Chr4 31287278 31288875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1095 2 268 ZF-HD Transcription Factor Family AT1G69600 39.405 8.26e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod04g1095 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1095 - - gmx:100814924 298.901