Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1090 ATGGTGCAGCGTCTCACCTATCGCAAGCGCCACAGCTATGCCACCAAATCCAACCAGCACAGGGTTGTCAAAACGCCCGGTGGGAAGCTCGTTTACCAGAGCACGAAGAAGAGGGCCAGCGGACCCAAGTGCCCTGTTACTGGAAAGAGAATTCAAGGGATTCCACATTTGAGGCCTGCTGAGTACAAGAGATCAAGGTTACCTAGAAACAGGAGGACTGTGAACCGGGCATATGGTGGAGTGTTGTCTGGAGGTGCTGTCAGAGAAAGGATTATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAAAAGGCTAAAGAAAAGCAAGCTTTGAAGGGCTGA 363 0.4959 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQALKG* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1090 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 119 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Dod04g1090 120 Gene3D - 1 37 - -
Dod04g1090 120 Gene3D - 39 120 - -
Dod04g1090 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Dod04g1090 120 PANTHER - 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1090 Dod-Chr4 31231073 31235309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1090 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 90.756 9.32e-75 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1090 K02915 - gmx:100305798 214.157