Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1068 ATGTCGAGCAGAAGATCTTCTTCTTCTTCTTCTTCTCGTTCGAGGCAATCATCATCAGGTGCCCCCAATGCTGAGATGATGACTGATGCTCAAATAACCGATCTCGTCTCCAAGTTGCAGCAACTCATCCCTCAGCTACGCGCAAGGCGTTCCGACAAGGTTTCTACGGCTAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCATAGAGAGGCTGATGATCTAAGTGATCGATTGTCAGAGCTTTTGGCCACCACTGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTGCTTATGTAA 312 0.4744 MSSRRSSSSSSSRSRQSSSGAPNAEMMTDAQITDLVSKLQQLIPQLRARRSDKVSTAKVLQETCNYIKSLHREADDLSDRLSELLATTDSNSAQAAIIRSLLM* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1068 103 Coils Coil 67 87 - -
Dod04g1068 103 PANTHER TRANSCRIPTION FACTOR PRE6 8 103 - -
Dod04g1068 103 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 92 IPR036638 GO:0046983
Dod04g1068 103 MobiDBLite consensus disorder prediction 1 26 - -
Dod04g1068 103 CDD bHLH_AtPRE_like 21 87 - -
Dod04g1068 103 MobiDBLite consensus disorder prediction 1 27 - -
Dod04g1068 103 PANTHER TRANSCRIPTION FACTOR PRE 8 103 IPR044293 GO:0006355|GO:0040008|GO:0046983
Dod04g1068 103 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 16 70 IPR011598 GO:0046983
Dod04g1068 103 Pfam Helix-loop-helix DNA-binding domain 31 71 IPR011598 GO:0046983
Dod04g1068 103 Gene3D - 29 100 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1068 Dod-Chr4 30764691 30765840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1068 27 102 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 68.831 3.34e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g1068 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1068 - - gmx:100816720 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1068 04 30764691 30765840 Dod04g1068 04 30764691 30765840 ECH
Dod04g1068 04 30764691 30765840 Dod05g1722 05 42582134 42584894 ECH