Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1065 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAGCCCCTCATCACCAAGATGACCATCAACCTCAACCTTCACTCAACTCAATTCTAACCTCATGTGCACCTCAAGAGTACCATGGAGGAGCACCCTTTCTAGGGAAGAGATCTATGTCATTCTCAGGGATTGAGCTTGGAGAAGAAGCTAATGGTGAGGAAGAATTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGACTGCAGCCTAGGCAGATTGCCATATGGTTCCAGAACAGGAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTCCTCAAGAGACAATTTGAAGCTGTCAAGGCAGATAACGATGCACTTCAGGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCACTGAAAAGTAGAGAACCAACTGAATCTATCAACCTCAATAAAGAGACAGAGGGATCCAGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGCAGACACCAGCTATTGACAGTCCTCTATCCACTCATCATCAGCACACCACCACCACCACCACCACCAGCAGAGCCCTCTTTCCATCATCATCTGCAGCAGCAGCTGCTAGGCCAACAGGAGGAGGAGTGGCTCAGCTTTTCCATACTAGTTCAAGGCCTGATCATCACCTTCACCAGTGCCAGAAGCAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGCCATTGATGATCAATCTGGCCTCTGGCCATGGTTGGAGCAGCAAAACTTCAATTGA 900 0.4767 MAFFPANFMLQAPHHQDDHQPQPSLNSILTSCAPQEYHGGAPFLGKRSMSFSGIELGEEANGEEELSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSDIKLDISRQTPAIDSPLSTHHQHTTTTTTTSRALFPSSSAAAAARPTGGGVAQLFHTSSRPDHHLHQCQKQIDHMVKEESLSNMFCAIDDQSGLWPWLEQQNFN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1065 299 CDD homeodomain 76 132 IPR001356 GO:0003677
Dod04g1065 299 Coils Coil 123 171 - -
Dod04g1065 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 299 IPR045224 GO:0003700
Dod04g1065 299 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Dod04g1065 299 MobiDBLite consensus disorder prediction 58 80 - -
Dod04g1065 299 Gene3D - 68 137 - -
Dod04g1065 299 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Dod04g1065 299 MobiDBLite consensus disorder prediction 179 232 - -
Dod04g1065 299 SUPERFAMILY Homeodomain-like 68 133 IPR009057 -
Dod04g1065 299 SMART HOX_1 74 135 IPR001356 GO:0003677
Dod04g1065 299 MobiDBLite consensus disorder prediction 176 240 - -
Dod04g1065 299 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Dod04g1065 299 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Dod04g1065 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 299 - -
Dod04g1065 299 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Dod04g1065 299 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1065 Dod-Chr4 30696134 30698952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1065 1 299 Homeobox Transcription Factor Family AT1G69780 62.951 2.60e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod04g1065 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1065 K09338 - gmx:100801479 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1065 04 30696134 30698952 Dod04g1065 04 30696134 30698952 ECH