Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1064 ATGCAAGATATGAAGAAGAAGCAGCAGCAGTGCAATGAAGAATCTCAGAAGAAGGAGCGGCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATTGGTATCCATGGAACTGAAAATTGGGCAATTGTTGCATCTAAATTCAAGGACAAGACGACAAGACAGTGCCGAAGAAGATGGTACACTTACCTGAATTCTGATTTCAAGAAAGGAGGATGGTCACAGGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACGGAAATAGCAAAGGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAATCGTTTCTCCACACTCTGCAGAAAGAGAGCAAAATGTGAAGCTTTAGCAAAAGAGAACACCATTTCATACATCAATTCAAATAACAAGAGAATCATCTTCCAACATGGTTATAATGCAGATGCAGCATCAGATTCTGCTTTACCTATAAAGAAGATGAGGAGGGCCCACATCCCTGATGATGTAGAAAAGACCAAGTTTGGAGATAGATCACATTTGAGAAATGGAACTCCAATAAATCAGCAGCCAAGAACACCTTTTGCAGTATTAGCTCAGAACTCCAACAGTGTTAACTTGGCAGACCAGCATCATGTTTGCGATGCCAAGTTTAGGGGTTCTGCTCAAAATAATAAGATTCAAGGGACATTCCTCAAAAAGGATGACCCAAAGATAAGAGCACTGATGCAACAAGCAGAATTGCTAAGTTCACTAGCTCAAAATGTTGATACAGAGGACATGGATCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTATGAACCGGAGCAAAGAATCAGGCATCCCTGGATGCAAGTTACAGCTCATAGATCTTAAAAATATGGTGGAGGACTTGAAGAGTAGCAATGAGGGAGGCCAGTCATGTTGGAGGCGAATGGAACTACATGAAGACTCTCCAGCCAGTTCTGAATACAGTACAGGATCCACTATCCCGCCTCCCTCAGCTGGTGATCATGTTGAACACTCGCTGCATAGGGATAGAGGAACTGAAATCAAGCCTATGCTAACTGAAGATAAGAAAGAAGTTGATGGATGTGAGAAAGGGGTTCTTTCTACTACAAGTCTGGATCAAGATATACTCCCATATAGTGAAGAACAGGTGAACAATGATGGCATTGTTTCGTCCTCGTCAAGATTGGAGTTCAGTTCTCCTGTTCAAGTAACCCCTCTATTCAGATCCTTGGCTGCTGGAATTCCCAGTCCACAATTTTCCGAAAGTGAAAGGAACTTCCTAAGGAAAACACTAGGCATGGAGTCTCCATCCTTCAACCCAAGCACAAACCCGTCACAGCCACCGCCCTGCAAAAGAGCGCTACTGGATAGTTTACAATCCATCTGA 1419 0.4264 MQDMKKKQQQCNEESQKKERHIVTWTQEEDDILREQIGIHGTENWAIVASKFKDKTTRQCRRRWYTYLNSDFKKGGWSQEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKRAKCEALAKENTISYINSNNKRIIFQHGYNADAASDSALPIKKMRRAHIPDDVEKTKFGDRSHLRNGTPINQQPRTPFAVLAQNSNSVNLADQHHVCDAKFRGSAQNNKIQGTFLKKDDPKIRALMQQAELLSSLAQNVDTEDMDQSLENAWKVLQEFMNRSKESGIPGCKLQLIDLKNMVEDLKSSNEGGQSCWRRMELHEDSPASSEYSTGSTIPPPSAGDHVEHSLHRDRGTEIKPMLTEDKKEVDGCEKGVLSTTSLDQDILPYSEEQVNNDGIVSSSSRLEFSSPVQVTPLFRSLAAGIPSPQFSESERNFLRKTLGMESPSFNPSTNPSQPPPCKRALLDSLQSI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1064 472 SMART sant 21 70 IPR001005 -
Dod04g1064 472 SMART sant 73 121 IPR001005 -
Dod04g1064 472 SUPERFAMILY Homeodomain-like 21 115 IPR009057 -
Dod04g1064 472 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g1064 472 CDD SANT 77 118 IPR001005 -
Dod04g1064 472 Coils Coil 1 21 - -
Dod04g1064 472 Pfam Myb-like DNA-binding domain 25 85 - -
Dod04g1064 472 Gene3D - 76 144 - -
Dod04g1064 472 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Dod04g1064 472 MobiDBLite consensus disorder prediction 441 472 - -
Dod04g1064 472 MobiDBLite consensus disorder prediction 323 357 - -
Dod04g1064 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Dod04g1064 472 CDD SANT 24 68 IPR001005 -
Dod04g1064 472 PANTHER TRANSCRIPTION FACTOR MYB88 5 466 - -
Dod04g1064 472 PANTHER MYB PROTEIN-RELATED 5 466 - -
Dod04g1064 472 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Dod04g1064 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
Dod04g1064 472 Gene3D - 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1064 Dod-Chr4 30634478 30639659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1064 13 317 MYB Transcription Factor Family AT2G02820 60.897 9.77e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g1064 Myb_DNA-bind_6 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1064 K09422 - gmx:100807667 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1064 04 30634478 30639659 Dod04g1064 04 30634478 30639659 ECH