Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1060 ATGGGTAACTGCCTAGATTCCTCAGCTAAAGTAGATGCAGCTGCTCATAGTTCCAGAACAACCACTTCTGGAATTTCAAAGACTAGTCGTTCATCTGCTCCTTCAAGCCTATCTACTTTGTCATGCAGTCAAAAAAGTGATTCCTCAAGTCTTCCCACACCGAGGTCTGAGGGTGAAATCTTGTCCTCCCCAAATCTTAAGGCCTTCTCGTTCAATGAGCTCAAGAATGCCACAAGAAACTTTCGCCCGGACAGCCTTCTTGGCGAGGGAGGATTTGGCTATGTTTATAAGGGGTGGCTTGACGAACACACATTTACTGCTTCCAAACCTGGATCAGGAATGGTTGTTGCTGTGAAGAAACTTAAGCCGGAAGGTTTTCAAGGCCATAAGGAGTGGTTGACTGAAGTTAACTACCTTGGGCAACTTCACCATCATAACCTGGTTAAATTAATTGGGTATTGTGTGGAGGGAGAGGACCGACTGTTGGTCTATGAGTTCATGCCCAAAGGAAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAGCCGCTTTCTTGGTCATCGAGGATGAAAGTGGCCATTGGTGCCGCCAGAGGACTGGCTTTTCTTCATAATGCCAAATCGCAAGTCATATACCGTGACTTTAAGGCATCTAATATTCTACTAGATGCTGAGTTCAATGCTAAACTATCTGATTTTGGCTTAGCAAAGGCTGGCCCTACTGGCGATAGAACTCATGTATCTACTGAAGTCATGGGCACTCGCGGATATGCAGCCCCTGAATATGTTGCAACAGGTCGGCTAACCACGAAGAGCGATGTATATAGCTTTGGGGTTGTGTTGCTTGAGCTCTTGTCCGGAAGACGTGCTGTTGATAGAACAAAAGCTGGTGTAGAGCAGGACCTGGTAGACTGGGCAAAACCATATTTGGGAGACAAAAGAAGACTATTTCGGATTATGGACACCAAGCTGGAGGGCCAATACCCGCAGAAAGGAGCCTTCATGGCTGCTACTCTTGCTATACAATGCCTTAATCGTGAAGCCAAGGCAAGGCCTACAATGACAGAAGTTTTAGCAACTCTGGAGCAGATTGAAGTCCCCAAAAACACAGGGCGAAACTCTCAATCGGAACAGAAGAGAGTCCATGTTCCTGCAAGAAAGTCTCCTGCTCAAAATCTGTCCCCTGTAAATGTCACTCCAACTGCATACCCATTGCCGCCTCGCCAGCCATCTCCTCAAGTACACTAA 1248 0.4655 MGNCLDSSAKVDAAAHSSRTTTSGISKTSRSSAPSSLSTLSCSQKSDSSSLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGYVYKGWLDEHTFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHHNLVKLIGYCVEGEDRLLVYEFMPKGSLENHLFRRGPQPLSWSSRMKVAIGAARGLAFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTEVMGTRGYAAPEYVATGRLTTKSDVYSFGVVLLELLSGRRAVDRTKAGVEQDLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAFMAATLAIQCLNREAKARPTMTEVLATLEQIEVPKNTGRNSQSEQKRVHVPARKSPAQNLSPVNVTPTAYPLPPRQPSPQVH* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1060 415 MobiDBLite consensus disorder prediction 368 415 - -
Dod04g1060 415 Gene3D Phosphorylase Kinase; domain 1 57 166 - -
Dod04g1060 415 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Dod04g1060 415 MobiDBLite consensus disorder prediction 400 415 - -
Dod04g1060 415 SUPERFAMILY Protein kinase-like (PK-like) 50 361 IPR011009 -
Dod04g1060 415 PANTHER OS01G0588500 PROTEIN-RELATED 22 413 - -
Dod04g1060 415 CDD STKc_IRAK 87 364 - -
Dod04g1060 415 Gene3D Transferase(Phosphotransferase) domain 1 167 389 - -
Dod04g1060 415 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 22 413 - -
Dod04g1060 415 ProSiteProfiles Protein kinase domain profile. 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1060 415 MobiDBLite consensus disorder prediction 13 61 - -
Dod04g1060 415 MobiDBLite consensus disorder prediction 1 61 - -
Dod04g1060 415 Pfam Protein tyrosine and serine/threonine kinase 85 360 IPR001245 GO:0004672|GO:0006468
Dod04g1060 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1060 Dod-Chr4 30573358 30576859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1060 59 361 Glycoside Hydrolase AT3G07070 54.575 2.62e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dod04g1060 PK_Tyr_Ser-Thr 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1060 - - gmx:100809778 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1060 04 30573358 30576859 Dod04g1060 04 30573358 30576859 ECH