Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1053 ATGTCGCAGTTGCAGCTACACTCTCTTCCATCATCGCTCTCATCTTGTTCTTCTTCCATTAAGCTCTGTCCAAACCAAAACCACTCTTTCTTCTCTACAAAGTCCTCTCCTTTCACCGTTCTTCCTCCTAAGCCCTTCGCCATCAGATGCCGCCACTCAGAGCTTTTCGACCAGAAAACCTTTTCCTCCACACCACCACCACCACCTCCTACCCCATCTCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCGCTTACAGTGACTCCTAGGCCTCCGGAATTCATGCCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAGGGTTATGTGCTGCTTCAGTTTGCACCCGCTATTGGTACGCGGCAGTATGATTGGACTAGAAAGCAGGTATTCTCGTTATCAGTGGGTGAAATGGGAAGTGTGATTAGCCTTGGTGTGAGGGAGTCTTGTGAATTTTTTCATGATCCCTTGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTTGAGCCTCTTCCAGACGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAATAAGCTTGTGAACGTTGATGAAAGCATCTATATCCCTATCACAAAAGCAGAGTTAGCAGTTTTGAGCTCAATTTTCAATTTTATCATGCCATACCTTATAGGTTGGCATACGTTTGCTGACTCCATAAAGCCAGAGGATTCCAGGGGAGTGAATACTGCCAACCCTACATACGGAGGAGACTATGAATGGAACAGATTGTGA 801 0.4582 MSQLQLHSLPSSLSSCSSSIKLCPNQNHSFFSTKSSPFTVLPPKPFAIRCRHSELFDQKTFSSTPPPPPPTPSPSVGALPPRVYVGHSIYKGKAALTVTPRPPEFMPLDSGAFKISREGYVLLQFAPAIGTRQYDWTRKQVFSLSVGEMGSVISLGVRESCEFFHDPLKGKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITKAELAVLSSIFNFIMPYLIGWHTFADSIKPEDSRGVNTANPTYGGDYEWNRL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1053 266 Pfam Whirly transcription factor 89 223 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod04g1053 266 MobiDBLite consensus disorder prediction 62 77 - -
Dod04g1053 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 1 265 - -
Dod04g1053 266 Gene3D Transcriptional Coactivator Pc4; Chain A 76 252 IPR009044 GO:0003677|GO:0006355
Dod04g1053 266 MobiDBLite consensus disorder prediction 58 78 - -
Dod04g1053 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 265 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dod04g1053 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 81 265 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1053 Dod-Chr4 30428074 30431192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1053 31 265 Whirly Transcription Factor Family AT1G14410 67.782 3.79e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Dod04g1053 Whirly 2.2e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1053 - - gmx:100789252 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1053 04 30428074 30431192 Dod04g1053 04 30428074 30431192 ECH