Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1051 ATGGAGCCTGCATCTGTAAAGAGTGAGTTCAACCCAAGAACTCATAGGTTGTTGATGGATAGTGAGACTAATGCCTCTAGGTGTGTGAAAAGGCGGCGAAGAGACTCGTCATCTATGGCAGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCAGACGAACAGCAGCCACAGGGTGGCCAATCAGCCCCAACCACAGTGAAGAGAAGCTCAAGGTTCAGGGGAGTTAGCAGGCATGTGAATGTGATGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGGAAGCAAGGAGCTTATAACGAAGAAGAAGCAGCTGCTAGAGCTTATGATTTAGCTGCACTCAAGTACTGGGGAACATCAACATTCACCAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCTTCATTGAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGCAACAAGTATCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCAGCTCGTGCATATGATATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGCACATTCTACTGCTTCACAAGAGCAAAAGCCAAGCACAGACCCTCAAACCTTTACAGCTTCTAAACCCATCATCCAGACCAAAGGAACTGCTGAGGTATCCAACTTCAACTTCCATTCATTCCCTGCAGGTGAATTGGACAGCACAAAGAAGCAAGACTTTTCCAAGTGTAGGAACCCTTTAAGTCCATGCAATAAGTCATACTCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTCATGCAGAGAAATCTGAATAATTCTTCTGCTGGAGAAGAAGCTGAAGAAGTTAAATTGAAATACCAACAAGAGGGAAGTGATGGGATTGGTGGAGGGGTATTTGATAACAATGACATTAACAGAACCTCCTACTTGGTCTCTTCCAATAATATCAACAGATTGCCTAACTTTGTGTCACCAGAAGAAGAGAACACAGTGCCAATGTATCATAGAACTGCACCATCCCTGATGTGGAATGGTGCTTTCAACTTGTCTTGA 1248 0.4351 MEPASVKSEFNPRTHRLLMDSETNASRCVKRRRRDSSSMAVLGGNEQQGEQPDEQQPQGGQSAPTTVKRSSRFRGVSRHVNVMWTGRFEAHLWDKGTWNPTQKKKGKQGAYNEEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGAHSTASQEQKPSTDPQTFTASKPIIQTKGTAEVSNFNFHSFPAGELDSTKKQDFSKCRNPLSPCNKSYSSSPTALGLLLKSSVFRELMQRNLNNSSAGEEAEEVKLKYQQEGSDGIGGGVFDNNDINRTSYLVSSNNINRLPNFVSPEEENTVPMYHRTAPSLMWNGAFNLS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1051 415 MobiDBLite consensus disorder prediction 1 72 - -
Dod04g1051 415 ProSiteProfiles AP2/ERF domain profile. 174 232 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 MobiDBLite consensus disorder prediction 40 71 - -
Dod04g1051 415 CDD AP2 173 234 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 SMART rav1_2 174 238 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 SMART rav1_2 72 144 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 Gene3D AP2/ERF domain 173 234 IPR036955 GO:0003700|GO:0006355
Dod04g1051 415 Gene3D AP2/ERF domain 71 140 IPR036955 GO:0003700|GO:0006355
Dod04g1051 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 404 - -
Dod04g1051 415 ProSiteProfiles AP2/ERF domain profile. 72 138 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 SUPERFAMILY DNA-binding domain 173 234 IPR016177 GO:0003677
Dod04g1051 415 Pfam AP2 domain 173 224 IPR001471 GO:0003700|GO:0006355
Dod04g1051 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 404 - -
Dod04g1051 415 SUPERFAMILY DNA-binding domain 71 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1051 Dod-Chr4 30378127 30380218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1051 168 247 AP2-EREBP Transcription Factor Family AT5G57390 39.773 7.26e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod04g1051 AP2 9.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1051 - - adu:107481246 602.823