Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1040 ATGGAGGGTATGAAGCTTTATGGAGGTCCAAGCATCACAGTTCTGCTCCAAAATGAAAGGCTTCATTGCCCCTCTGAACCTTTTGAGCCTCTCTGGCTTCACGCTTCTGAACCTTCCTTTCAAGGTTCAAGATCCCTGGTTAACTTTGAGAATGTTAGTGGCAGCAGGGTCATGATGGATAGGCCCTTTTTCCAACCGGTTGAGAAAGAAGAGAAGGTTGATGATGATGACTACGAGGGGTGCTTCCATCAAGGTAAGAAAAAGAGGCTCCCAAGTGAACAAGTCCAGTTCCTTGAGAGGAACTTCGAGGTAGAGAACAAGCTTGACCCCGAGAGGAAGCTCCAGCTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTTGCCATATGGTTCCAAAACCGGAGAGCAAGGTTCAAGATCAAGAAGATAGAGAAAGATTACGGCACATTGAAAGTTAACTTTGACAGGCTCAAAGCTGACCATGACAATCTTCTTCAAGAGAATCAGAAGCTAAAAGAAAAGGTGAACTCTCTCGAGAGCAGATTGATTCCCAGAGAGAAAGAGGCAGAGAATTCTGGTGGCAAGTTATATGGTGATGTCAATTCAAAGGATGTAGGACACACGGAATTAGTGTCAATTGCAGCGTCCAAGAATGAGTCCAAAGTGCCTACTCTTCCTCTGATGGTCATCTGCAGGCAGGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCAAATTACACTGAGGGAAACCATTCCTCATTGGGGCAGCCAGATCACTCGGATTTCTCACAGGATGAAGAAGATAACATAAGCCATGACCTCTTGACCCTGCCATTCTTGCCAAAGGTTGAAGATTCCTGTTATCATGGACCACATGACAATTCTTACAATTTTGAGTTCCCAGTTGATCAGGATCAGCCCTTCTCTTTTGGTCTTACTGAGTCATATTACTAG 969 0.4541 MEGMKLYGGPSITVLLQNERLHCPSEPFEPLWLHASEPSFQGSRSLVNFENVSGSRVMMDRPFFQPVEKEEKVDDDDYEGCFHQGKKKRLPSEQVQFLERNFEVENKLDPERKLQLAKELGLQPRQVAIWFQNRRARFKIKKIEKDYGTLKVNFDRLKADHDNLLQENQKLKEKVNSLESRLIPREKEAENSGGKLYGDVNSKDVGHTELVSIAASKNESKVPTLPLMVICRQEDANSAKSDVLDSDSPNYTEGNHSSLGQPDHSDFSQDEEDNISHDLLTLPFLPKVEDSCYHGPHDNSYNFEFPVDQDQPFSFGLTESYY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1040 322 MobiDBLite consensus disorder prediction 239 271 - -
Dod04g1040 322 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Dod04g1040 322 Gene3D - 81 146 - -
Dod04g1040 322 Coils Coil 140 181 - -
Dod04g1040 322 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 315 IPR045224 GO:0003700
Dod04g1040 322 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 315 - -
Dod04g1040 322 CDD homeodomain 86 142 IPR001356 GO:0003677
Dod04g1040 322 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Dod04g1040 322 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Dod04g1040 322 Pfam Homeodomain 87 139 IPR001356 GO:0003677
Dod04g1040 322 SMART HOX_1 83 145 IPR001356 GO:0003677
Dod04g1040 322 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Dod04g1040 322 SUPERFAMILY Homeodomain-like 82 141 IPR009057 -
Dod04g1040 322 ProSiteProfiles 'Homeobox' domain profile. 86 141 IPR001356 GO:0003677
Dod04g1040 322 MobiDBLite consensus disorder prediction 242 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1040 Dod-Chr4 30121258 30123228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1040 42 249 Homeobox Transcription Factor Family AT3G01470 40.865 2.37e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod04g1040 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1040 - K09338 gmx:100804328 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1040 04 30121258 30123228 Dod04g1040 04 30121258 30123228 ECH