Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1018 ATGGATCCGGGGGCGATGATGAACGAGGGTTCATTTGGGAATGGGAGTGGCAATACGACGCCGTATAGCTTGGCGGAGATCTGGCAGTTCCCGCAGGCCGTGAACGGCGGCGGAGGGCTTGGGCTCAGGAGGCCGCAGTTCGGCACCGGTTTGGGGCAGTTTGGGGATTTCTCGACCGGTCCGAACCGGGATGGTCCGGGTTCCGGACCGGTTGGTTCTGAGCAGAGGGCGGCGAATAATAACGGTAGAAAGAGGCGTGACTCCGAGGAGGAATCGGCTAAGGGCGTGTCCACCAGCAATGGTGGAGCCCATGGCGTGAATGACGGTGATGGAAAACGGGTGAAAGCATCATCAGGGAACAGGAATGAAAGCCGTGATGTTAAAGTTGAATTAGGAGAAGCAAGTTCAGGAAAGCCTGCGGAGCAAAGCACTCAGCCACCTCCTGACCCTCCTAAGCAGGATTACATCCACGTGCGAGCCAGAAGGGGTCAGGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGCAATAAGGTTATTGGGAAAGCATTGGTCCTGGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTGGAGTTTTTATCAATGAAGCTTGAAACAGTGAATTCAAGATTGAACTCTGGCATTGAAGCTTTCCCTCCTAAAGATTTTGGTCAGCAGACATATGATCCCGCTGGCATGCCATTTGGTTCACAAGCTACTAGAGAATATAGCAGAGGTTCTTCGCCTGAGTGGTTACATATGCAGGTAGGAGGTGCTTTTGAAAGAGAACAACATAGGCTTTGA 867 0.5075 MDPGAMMNEGSFGNGSGNTTPYSLAEIWQFPQAVNGGGGLGLRRPQFGTGLGQFGDFSTGPNRDGPGSGPVGSEQRAANNNGRKRRDSEEESAKGVSTSNGGAHGVNDGDGKRVKASSGNRNESRDVKVELGEASSGKPAEQSTQPPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRLNSGIEAFPPKDFGQQTYDPAGMPFGSQATREYSRGSSPEWLHMQVGGAFEREQHRL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1018 288 Gene3D - 161 237 IPR036638 GO:0046983
Dod04g1018 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 284 IPR024097 GO:0006355
Dod04g1018 288 Coils Coil 211 231 - -
Dod04g1018 288 SMART finulus 170 220 IPR011598 GO:0046983
Dod04g1018 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Dod04g1018 288 MobiDBLite consensus disorder prediction 108 132 - -
Dod04g1018 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Dod04g1018 288 MobiDBLite consensus disorder prediction 79 93 - -
Dod04g1018 288 CDD bHLH_AtBPE_like 154 239 - -
Dod04g1018 288 PANTHER BNAC05G07950D PROTEIN 1 284 - -
Dod04g1018 288 MobiDBLite consensus disorder prediction 11 26 - -
Dod04g1018 288 MobiDBLite consensus disorder prediction 1 155 - -
Dod04g1018 288 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1018 Dod-Chr4 29546201 29549305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1018 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.911 4.74e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g1018 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1018 - - gmx:100784478 411.379