Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1009 ATGGATCAAGCCATAGCATATTTCAAATCGATAAAGGATACATTTCCAGATGATAAGGAAAAGCTTGAGAGTTTTCGGCAACTCCTGGCGGAATTCCGTAATGAAAGAATTGATGCCAAGGGTGTCGTAGCAGCAGTGATGGAGCTGTTCAAAGGACATGATCATCTGATTTTGGGACTCAACGCCTTCTTGCCCCTTGGATATGAAATCACGCTTCAATCTGAGGAGGATGAAAAACCTACCTGTTATGCAGATTGTTTTAATTTCGTGCGCAATGTGAAGGCTCGGTTTGGAGAAGATAGTGACCAATATAATTTGTTTATAGGCAAAATTGGAATGCACGAAGACGGAAAGAAGACTCGTGATGAGCTTTTACATGAGATCGCTGAATTTCTTCAGGACCATGAAGATCTTCTTGATGAGTTTACTCAAATTTATGGCGATGTTTTTGGAAGAGGCTCTACTCATGATGTGCAGCAACAACAACATTCTTCTGACAAGGAGAAAGAAAGGACCACAACTTCACCTGATGTCAGTTCTAGTGCATGTGCCAACAAGGATGATGATTCAGGTCCGAAGAAAATCACTAATTTGGATAAACCTATTAGTCAGCTGAGGCTTTCTAACACGGAGCAATGCACTCCCAGTTATCGTCTTCTCCCAGAAAGATACATATCATTACCTAGCGAGAGAACAGAACTTGATGCAAAAGTATTGAATGATCGATGGGTATTGAATTCAAGAAAGAAAACTTCCTTCAAACAAGTGCGCAAAAATGAGTGCGAATTGGTCTTGCTTAATTGCGAAGATGACAGGTGTGATCTAGATATGTTGATAGAGCTTGCAAAGGCTGCAGCAGAGCGAGTTGAAGAACTATTAACAAAGATCAATACCAATAGAGTTGGAGGACACGGTCCAATTTGTATTGAGGAGCACTTAACAGTTATAAATCTTAGGACCATTGAAAAATTGTACGATGAGCATGGGGTTGAAGTAATAACTGTGTTGAGGGAGAATCCATGTCGAGCTTTCCCAGTGATATTACCCTGCTTGAAGCAGAAACAACACGAGTGGAAATGTTACCGTGCTTATCTTAATAAACTATGGGCTGAAAAATATAGAGAGAACTATCACAAATCACTTGATCACCGTAGGTGTTACTTTGAGGAACAAGATAAAAAATCCTTGAGCACCGAAGCCTTACTGGCAGAAATAAAAAAAATTAGTGAGGAGAAACAAGAAGAAGAAGATAGCTTTTTTCATGCAATTGTCGGTGGATATAGAAGGCCTTTTCTTCCTCATTTGGAATTTGAGTATCCTGATCCAGGGATTCACCGAGATATGTATCAGATCATAAAGTGTTCTTGTGGGGAAGTTTGTACCACTGAAGCGGTGGATAAGGTTATGAACGTTTGGACGACCCTTTTAGAGCGGATGCTTGGGATTCCTTCTCTGCCACATGGTGCTGAGGATACAAAAGATGAGGATAATTCCATTGAAAAGTTTGCGAATGTTAATGTCTCAGTGGCCTCTGGGTTGGAGCAAATTACTGGAATAGCAAATGCAGATGATGCATCAGGGCCTACTGCTACTCCATCTAGACCTGGTAATGTTTCTGGCGAGGGAGGACCTGATTTACCTTCGTTAGAGGGGAATGAATCAGTTGGACACTTAAGTGAAAGAGAAGAGGGTGAGTTAACTCCTGACAATGAAATTGAAGATGAAGGAATGGATGGTGCCAACGAAATTAAAGGAGATGGAGCTTCATTGTTGCTATCTTTACACACTGTAAAGCCTCTGGTGGAGCATGTTCCCCCAGTTGTGCTTGACAAAGAAAGGAATTCTCAAGTATTTTACGGAAACGATTCATTTTATATACTATTTAGACTTCATCAGACATTGTATGAGAGGTTACAATTCGCAAAGATCAACTCAATTCTGGCTGAAAATGTGTCAAGGGCTACATATGACAGGTTCTTGACTGAAGTTTACAACTTACTGGATGGTTTTTCTGATATTGGAAAATTTGAGGTTGAATGTCGAGCTATTTTTGGAGCTCAATCATACGTCTTTCTCTCAATAGACAGGCTGATACATAAACTGGTTATGAAGCTTGAAGCAGTTGCCTCTGATGAGATGGATAGCAAGCTTCTTCAACTGTATGGATATGAGAAATCAAGAAAAGCCGGAAGATTCACCGATATAGTTTATCATGCAAATGCACATGCTGTTCTTCCTGATGAAAACATATATTGTGTTGAATGTTCACATGCACCCGCCAAATTGTCTATTCAACTGTTGGACTGTGGACATAATGAGACTCTAGTGACTTCAATGGAACCTGAATTTTCAGCCTATCTCCACGGTGACATACTTTCTGATGAATTCCCTGATAGAAAGGAGAAGCCAGGAATTTTCTTGAAGAGGAATGCATGCAAATATGCCTGTGGTGATGAATTTTCAAGCCGGGCCATGAAAGGGCTACAGGTTATCAATGGCCTAGAGCTTAGAATAGCTTGCAGTTCATCCAAGGTTAGATATGCTTTGGGCACTGAAGACTTTTTATTTCGGACAAGAAGGGATGAGGTCAAAGCAGGCCATGAACAGGCATATTCAAAGCAGAGTAGAGATTTTCCATTACAAATAGCAATCCACAAGCCATTTCCGAGTCCAAGCTGA 2679 0.4061 MDQAIAYFKSIKDTFPDDKEKLESFRQLLAEFRNERIDAKGVVAAVMELFKGHDHLILGLNAFLPLGYEITLQSEEDEKPTCYADCFNFVRNVKARFGEDSDQYNLFIGKIGMHEDGKKTRDELLHEIAEFLQDHEDLLDEFTQIYGDVFGRGSTHDVQQQQHSSDKEKERTTTSPDVSSSACANKDDDSGPKKITNLDKPISQLRLSNTEQCTPSYRLLPERYISLPSERTELDAKVLNDRWVLNSRKKTSFKQVRKNECELVLLNCEDDRCDLDMLIELAKAAAERVEELLTKINTNRVGGHGPICIEEHLTVINLRTIEKLYDEHGVEVITVLRENPCRAFPVILPCLKQKQHEWKCYRAYLNKLWAEKYRENYHKSLDHRRCYFEEQDKKSLSTEALLAEIKKISEEKQEEEDSFFHAIVGGYRRPFLPHLEFEYPDPGIHRDMYQIIKCSCGEVCTTEAVDKVMNVWTTLLERMLGIPSLPHGAEDTKDEDNSIEKFANVNVSVASGLEQITGIANADDASGPTATPSRPGNVSGEGGPDLPSLEGNESVGHLSEREEGELTPDNEIEDEGMDGANEIKGDGASLLLSLHTVKPLVEHVPPVVLDKERNSQVFYGNDSFYILFRLHQTLYERLQFAKINSILAENVSRATYDRFLTEVYNLLDGFSDIGKFEVECRAIFGAQSYVFLSIDRLIHKLVMKLEAVASDEMDSKLLQLYGYEKSRKAGRFTDIVYHANAHAVLPDENIYCVECSHAPAKLSIQLLDCGHNETLVTSMEPEFSAYLHGDILSDEFPDRKEKPGIFLKRNACKYACGDEFSSRAMKGLQVINGLELRIACSSSKVRYALGTEDFLFRTRRDEVKAGHEQAYSKQSRDFPLQIAIHKPFPSPS* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1009 892 Pfam Sin3 family co-repressor 211 299 IPR013194 -
Dod04g1009 892 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Dod04g1009 892 MobiDBLite consensus disorder prediction 154 201 - -
Dod04g1009 892 Gene3D Paired amphipathic helix 3 65 IPR036600 GO:0006355
Dod04g1009 892 SMART hdac_interact2seq4b 209 306 IPR013194 -
Dod04g1009 892 Pfam C-terminal domain of Sin3a protein 618 643 IPR031693 -
Dod04g1009 892 Pfam C-terminal domain of Sin3a protein 651 855 IPR031693 -
Dod04g1009 892 Coils Coil 398 418 - -
Dod04g1009 892 MobiDBLite consensus disorder prediction 522 536 - -
Dod04g1009 892 SUPERFAMILY PAH2 domain 80 145 IPR036600 GO:0006355
Dod04g1009 892 Gene3D Paired amphipathic helix 85 145 IPR036600 GO:0006355
Dod04g1009 892 SUPERFAMILY PAH2 domain 2 68 IPR036600 GO:0006355
Dod04g1009 892 ProSiteProfiles PAH domain profile. 79 149 IPR003822 GO:0006355
Dod04g1009 892 MobiDBLite consensus disorder prediction 521 580 - -
Dod04g1009 892 Coils Coil 275 299 - -
Dod04g1009 892 Pfam Paired amphipathic helix repeat 23 64 IPR003822 GO:0006355
Dod04g1009 892 PANTHER SIN3B-RELATED 1 869 IPR039774 GO:0003714
Dod04g1009 892 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1009 Dod-Chr4 29337404 29351865 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1009 4 77 WRKY Transcription Factor Family AT4G12020 41.892 3.73e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g1009 Sin3a_C 3.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1009 K11644 - han:110921400 537.339