Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1007 ATGAAGAGGTGCAGAGATGATGCTTACATGAGTTCTCAACTCAAACGGCCTATTATGTATTCTAAAGGGGAAAGCTCGGCCCAACACCAGGTGATGAGTGGTGGTGGCGGTGCCGGTGGTGGTGGTGGTCAAAAACTAACCACAAATGATGCATTAGCATATCTCAAGGCCGTGAAGGATAGATTTCACGATAATAAAGAAAAGTATGATGACTTTTTGGAAGTCATGAAAGAATTCAAGGCCCAAAGAATTGATACTGCGGGTGTCATAATTAGAGTGAAGGAGCTGTTCAAAGGGCATAGAAATCTAATTTTGGGGTTCAACACCTTCTTGCCGAAGGGATATGAAATCACACTTCCATTGGAGGATGAACAACCTCAGCAGAAGAAGCCTGTTGAATTTGCAGAAGCTATAAATTTTGTAGGCAAGATTAAGAGTCGGTTTCAAGGTGATGATCGTGTTTATAAGTCATTTCTTGATATATTGAATATGTACAGAAAGAAAACCAAGGCTATCAATGAAGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGAAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGTAACAGCTTCTACTCATCATGCTTCTGCGCGAAATTCTCTGCTTCGTGATAGAATCTCTGCAATGCCAACTATGAGGCCAATGCATGTTGACAAGACCATGGTTGCGCATGGTGATCGTGACCTCAGTGTTGACCGTCCTGATGATAAGGAGCAGAGGAGGCATATTGAGAAGGAAAAGGACCATCAAGAAGAGAGAGACAGGAGAGAACGGGAAAGGGATGACAGAGATTATGATTATGATGGTAGCCACGACCGATCCCCCAAGCAGAAATCTGGTCAAAGGGGTGAAGAGTCTGGTGCTGAACCATTGCATGATGCAGATGATAATTTTGGATTGCGCCCTATGCCATCTGCTTGTGATAATAGAAGTTCTTTGAAAAAAAACTTTGTCATCTCAGGTATGTGTAGTCAAGTAGTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGTACTCCTGAGGATTACCAGGAATTTTTGAAGTGTCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAACTGCAGTCATTGGTGGGTGATTTGCTGGGAAAATATCCAGATCTTATGGAGGGATTTAATGATTTTTTGGCACAGTGTGAGAAGAATGAAGGATTTCTTGCTGGCATCATGAATAAAAGACATGGATTGAAACCAATGAAGGTAGAGGACAGGGACAGAGATCGGGAACAGGATAAAGTTGAAGGGGTGAAGGAAAGGGATCGCGAATGCCGAGAAAGGGACAAAACCACTGCAATTGCCAATAAAGATGCTTCAGCTCCTAGGATGTCTCTATTTGCCAGCAAGGATAAGTATTTAACAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACAATGCACTCCCAGCTACCGACTTCTGCCAAAAGATTACCCAATACCAACAGTTAGCCAGAGAACAGAACTTGGTGAAGAAGTATTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAAGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAAAGTTTATTCAGATGTGAAGATGACAGGTATGAACTTGGTATGGTGTTAGAGTCTGTAAATGCGGCGACCAAGCGAGTTGAAGAGCTCATAGAAAAGATTAATACTAATATTATTGAAGGCGACTGTCCAATTCGTATTGAGGAACACTTAACAGTTTTAAATCTTAGATTGATTGAACGATTATATGGTGACCATGGGCTTGATGCGATGGATGCACTAAGGAAGAATGCATCTCGAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAATATGAAGAGTGGGCAAGGTTTCAGGTTGAGTGTACCCCATGTTGGGGTAAAGTATACGCTATGAACTATCATAAATCACTGGATCACCGTAGCTTCTACTTTAAGCAGAATGATAGTAAAAGCTGGAGTTCTAAAGCCTTACTGGCAGAGATCAAAGAAATTAGTGAGAAGAAATGGAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCTCACTTGGAGTTTGAGTATCCTGATCTGGAGATTCTTGAAGATTTGTATCAGCTAATAAGATACTCCTGTGGTGAACTTTGTACGACTGAACAGCTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTTTTACTCGCCCCCAGGGTCCTGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGCCATAAGTGGCACTGAAAATGTTGCCAATGTTGATGATAGTCCTAGTGCTGGTGCTGCTCCTAAGAATTTAAACATTAACAGAAATGGGGATGAGAGTATTCCATTAGAGCAATCAAATTCTTGCAAAGAGTGGAAAACAAATGGGGATAGTGGGGTTAAAGAGGATAATTGTCTTGATCCAGATCGCACTGCACATAAGACCGAAACTTTGGGCAGTAGTGCACAGCAAGTGGCCTCTGGAATGGAACAAAGTAATGGAAGAACTAATGTAGATAATGCATCAGGACTTACAGCAACTCCATCTGGACCTGGTAATGTTTCTGGTGAGGGAGGGCTTGATTTACCTCCATCAGAGGGTGCTGATTATACAAGACCTGTTACATCCTCAAATGGGGTCGCTGAAGGCACTAAAGTTCACAGATACCAAGAAGAATCTGTTGGACAATTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGAGATGCTGGTTTGGAGGCAGTTATTAAAGGGAAGGATGGTGGTGCAAGCCAACAATACCAAAATAGGCATGGGGAAGATGTTTGTGGTGAAGCTAGAGGAGAAAATGATGTTGGGAAAGGTGAAGAAAGTCCTCATAGGTCATTGCAGGACAGTGACAATGCTTCGGAAAATGGTGCTGCTTCTGAAAGCGAGTCTGGTGAAGAGCAGGAGGAGGATGGGGATCATGAACACGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCCGATGCCAATGATGTTGAAGGAGATGAAGCCCCATTGCCATTTTCAGAACGCTTTCTTCTCACTGTAAAGCCACTGGCAAAACATGTTCCGCAGGTGTTGCGTGAGAAAGAAAAGAATGTTCGAATTTTTTATGGAAATGATTCCTTCTATGTGCTGTTTAGACTTCAGCAGATATTGTATGAGAGGATACATTCAGCAAAGATTAACTCATCTTCTGCTGAAAGAAAGTGGAGGGCTTCAAATGATACTAGCTCTACTGATCAATATGGCAGGTTCATGAATTCTCTTTACAATTTACTGGATGGTTCTTATGATAATACAAATTTTGAGGATGACTGTCGAGCTATAATTGGAACACAATCATTTGTTTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCATCTGATGAGCTGGCTGGCAAGCTTCTTCAACTATATGCACATGAGAAATCAAGAAAACCTGGAAGATTTGTCGATTCAGTTTATCACGATAATGCTCGCGTTCTTCTTCATGATGAGAATATATACCGAATTGAATGTGTTAAGTTTTTATTTTTCTACTACTCTTCTGGGATCGGCCTTTGA 3747 0.4121 MKRCRDDAYMSSQLKRPIMYSKGESSAQHQVMSGGGGAGGGGGQKLTTNDALAYLKAVKDRFHDNKEKYDDFLEVMKEFKAQRIDTAGVIIRVKELFKGHRNLILGFNTFLPKGYEITLPLEDEQPQQKKPVEFAEAINFVGKIKSRFQGDDRVYKSFLDILNMYRKKTKAINEVYQEVAALFQDHEDLLEEFTHFLPDTSVTASTHHASARNSLLRDRISAMPTMRPMHVDKTMVAHGDRDLSVDRPDDKEQRRHIEKEKDHQEERDRRERERDDRDYDYDGSHDRSPKQKSGQRGEESGAEPLHDADDNFGLRPMPSACDNRSSLKKNFVISGMCSQVVAFLEKVKEKLRTPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNDFLAQCEKNEGFLAGIMNKRHGLKPMKVEDRDRDREQDKVEGVKERDRECRERDKTTAIANKDASAPRMSLFASKDKYLTKPINELDLSNCEQCTPSYRLLPKDYPIPTVSQRTELGEEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRYELGMVLESVNAATKRVEELIEKINTNIIEGDCPIRIEEHLTVLNLRLIERLYGDHGLDAMDALRKNASRALPVILTRLKQKYEEWARFQVECTPCWGKVYAMNYHKSLDHRSFYFKQNDSKSWSSKALLAEIKEISEKKWKEDDVLLAIAAGNRRPILPHLEFEYPDLEILEDLYQLIRYSCGELCTTEQLDKVMKIWTTFLEPMLGVFTRPQGPEDTEDVVKAKNNSAISGTENVANVDDSPSAGAAPKNLNINRNGDESIPLEQSNSCKEWKTNGDSGVKEDNCLDPDRTAHKTETLGSSAQQVASGMEQSNGRTNVDNASGLTATPSGPGNVSGEGGLDLPPSEGADYTRPVTSSNGVAEGTKVHRYQEESVGQFKSEREEGELSPNGDFEEDNFAVYGDAGLEAVIKGKDGGASQQYQNRHGEDVCGEARGENDVGKGEESPHRSLQDSDNASENGAASESESGEEQEEDGDHEHDNKAESEGEAEGMADANDVEGDEAPLPFSERFLLTVKPLAKHVPQVLREKEKNVRIFYGNDSFYVLFRLQQILYERIHSAKINSSSAERKWRASNDTSSTDQYGRFMNSLYNLLDGSYDNTNFEDDCRAIIGTQSFVLFTLDKLIYKLVKQLQAVASDELAGKLLQLYAHEKSRKPGRFVDSVYHDNARVLLHDENIYRIECVKFLFFYYSSGIGL* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1007 1248 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Dod04g1007 1248 MobiDBLite consensus disorder prediction 222 317 - -
Dod04g1007 1248 MobiDBLite consensus disorder prediction 969 1056 - -
Dod04g1007 1248 Pfam Sin3 family co-repressor 488 579 IPR013194 -
Dod04g1007 1248 MobiDBLite consensus disorder prediction 1028 1042 - -
Dod04g1007 1248 MobiDBLite consensus disorder prediction 980 1004 - -
Dod04g1007 1248 Pfam Paired amphipathic helix repeat 67 111 IPR003822 GO:0006355
Dod04g1007 1248 Pfam Paired amphipathic helix repeat 355 399 IPR003822 GO:0006355
Dod04g1007 1248 Pfam Paired amphipathic helix repeat 154 197 IPR003822 GO:0006355
Dod04g1007 1248 SUPERFAMILY PAH2 domain 43 113 IPR036600 GO:0006355
Dod04g1007 1248 MobiDBLite consensus disorder prediction 787 949 - -
Dod04g1007 1248 Coils Coil 172 192 - -
Dod04g1007 1248 PANTHER SIN3B-RELATED 1 1235 IPR039774 GO:0003714
Dod04g1007 1248 ProSiteProfiles PAH domain profile. 332 402 IPR003822 GO:0006355
Dod04g1007 1248 MobiDBLite consensus disorder prediction 829 848 - -
Dod04g1007 1248 Pfam C-terminal domain of Sin3a protein 1089 1235 IPR031693 -
Dod04g1007 1248 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Dod04g1007 1248 ProSiteProfiles PAH domain profile. 130 200 IPR003822 GO:0006355
Dod04g1007 1248 MobiDBLite consensus disorder prediction 233 310 - -
Dod04g1007 1248 Gene3D Paired amphipathic helix 128 201 IPR036600 GO:0006355
Dod04g1007 1248 SUPERFAMILY PAH2 domain 127 199 IPR036600 GO:0006355
Dod04g1007 1248 SUPERFAMILY PAH2 domain 338 402 IPR036600 GO:0006355
Dod04g1007 1248 MobiDBLite consensus disorder prediction 801 828 - -
Dod04g1007 1248 MobiDBLite consensus disorder prediction 849 886 - -
Dod04g1007 1248 SMART hdac_interact2seq4b 486 586 IPR013194 -
Dod04g1007 1248 MobiDBLite consensus disorder prediction 919 940 - -
Dod04g1007 1248 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1235 - -
Dod04g1007 1248 Gene3D Paired amphipathic helix 335 404 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1007 Dod-Chr4 29234561 29242777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1007 19 126 WRKY Transcription Factor Family AT4G12020 52.778 1.50e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod04g1007 Sin3a_C 1.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1007 K11644 - gmx:100781798 1746.1