LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1001	ATGGCTTTGAATATGATGCTTCAACCACAACCAAGGCTTCTTCTTCTTCTCCTGAGCCTTGTTTTGGTTTTGCTTTCTTTGTTAGTTCCATCCTGCCATTCCCAGACCGGCACTTCTCCTCAGAACATTGAAACTTTCTATCCAAATGAAACTTCAACACCAGCACCAGCACCAGCACCAGTACCAGTACCGCCGAAACAAAGGCCTGAACCACCAACAAAGCCTCAACCATCACCACCACCAACACATGAGCCGGCCAAAGGACCTGTCGCAGCATCAAGCGGCACTTCATCAAATGGTAAGGTAGCAATGGCGGTGGCTGCAACTGCAGCAAGCACCATAGTTATTTGTGGTTTGCTTTTCATTATACTTCAAAGATGCTTCAGGGCAAGGAGGAGGAAGGAGATAACCAACAATGCTTATGCTGGAGATAGCCGTGTCGTGCCTCAAGGGAATGCGTTTGAGCGAATCGATGGGAATGTCAAGGGACTGATTGTTGATGAGGATGGTTTGGATGTGGTTTATTGGAGAAAGCTTGAAGGGAGGAACTCCAAGAGGGGTCTTCATAAGGAGGTCTTGCAAAGTCCTAAAGACAAAGACAAAGAAAAAGAAGAGGATGGTCATGAAGGAAATCAGGTGAAAAAATCCAGGTCCATCCAAGAAGTTCCTCTACTTAGAGGGAAATCTTCAACTTCCCACATAAATATAGTTCCAGAAGTGGATGAGCCATATAGAATGGAAAGAATTCCCCTTCATACTTCTGCTCCCAATCCTATTCCTACAAGTTTCCCTGCATCAGTTGGTGCTGCTTTCAACAATGTTCAGAAACCAGACTCCCCAACTGAATCGTCAACTCCAGCCCCTCCTGCTTCACCATCAACACCATCCTCAGAAACTTTGTCAGCAATTCCAAAAGGGAATAACAGCCCTGCAGTACCAGCACCTCCCCCTCTACCAATCCCGGCTAGAAAGAGGCCAGCACCACCTCCTCCTCCTCCACCAAAGGCAGGTACTTTGAGGTCATCATCAAAGCCACCACCTGCCCCTCTTGAAATGCTAATTACCTCCACCAGTAAGCGAACTAACTCCTCGGGGAAAGGCACACCAGAGTCCAATGATGATCAAGTGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATACTAATGTTGATCACTCCATGGTGTGGGACAAAGTCGATCGCGGCTCTTTCAGAGCTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCCACCAACCGAAGATCCCCCAAAGGAAAGAATCCAAGCAAGGATACCTCGGCCTCCTCAGCAAAAATTTTCCTTCTAGACCCCAAAAAATCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAGATGAAATTCTTGATGCACTCATTGATGGTAAAGGCCTTAATGCAGATACTCTTGAAAAGCTTGTTAGAATTGCTCCAACAGAAGAGGAGCAAGCTCTTATCCTTGAGTACACAGGGGACCCTGCAAGACTTGCAGCAGCTGAATCTTACCTCTATCACATCCTTAAAGCTGTTCCTTCAGCATTTAAGCGCTTGAGTGCCATGTTATTCAGGTTGAACTATGACTCTGAGATTCTAGAAATCAAGGAGTCTCTTCAGGTCCTTGAACTGGGGTGCAAGGAGCTTAAAAACCAGAGAATATTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAACCGTATGAATGCAGGAACAGCCAGAGGTAATGCTCAAGCATTCAACTTGGCTTCTCTAAGGAAGCTCTCTGATGTCAAGAGCACCAATGGAAAAACAACATTACTTCACTTTGTGGTTGAAGAAGTAGTCCGTTCTGAAGGAAAGCGTGTCCTTCTCAACCGCAACGGCAGCCTGAGCCGGAGTAGCAGTAGGAGCAGCAACAACAGCAATGAAAACTTTGAGAACTATGCTGCTTCAAATGAACAAAGAGAAAGGGAATACACAACACTAGGATTGCCAGTTGTAGGAGGGATCAGTTCTGAGTTTTTCAACGTTAAGAAAGCAGCACTTATAGATTATAATACCTTAGTTGGTTCAATCTCAACCCTCTCAACCCAGATACTTGAAATTCAAGAAATTGTTTCCCAATGCAGAAAGGGTGAGGGAGGGTATTTTGTGAAAGAAATGGAACATTTTATTCGGAATGCCGGGGAAGAATTGAGATCAGTGAGGGAGGAGCAAACAAGGGTAATGCAGCTTATCAAGAGAACAACAGAATATTATCAAGGAGGAGCTACAAGAGGCACTGCAGAAAACAGTCTTCAACTGTTTGTCATAGTGAAGGATTTTATGGGAATGGTTGATCAAGTCTGCATTGAAATTGCACGCAACATGCAGAAGAGGAAGACACACAAGGCATCATCATAA	2415	0.4493	MALNMMLQPQPRLLLLLLSLVLVLLSLLVPSCHSQTGTSPQNIETFYPNETSTPAPAPAPVPVPPKQRPEPPTKPQPSPPPTHEPAKGPVAASSGTSSNGKVAMAVAATAASTIVICGLLFIILQRCFRARRRKEITNNAYAGDSRVVPQGNAFERIDGNVKGLIVDEDGLDVVYWRKLEGRNSKRGLHKEVLQSPKDKDKEKEEDGHEGNQVKKSRSIQEVPLLRGKSSTSHINIVPEVDEPYRMERIPLHTSAPNPIPTSFPASVGAAFNNVQKPDSPTESSTPAPPASPSTPSSETLSAIPKGNNSPAVPAPPPLPIPARKRPAPPPPPPPKAGTLRSSSKPPPAPLEMLITSTSKRTNSSGKGTPESNDDQVKLKPLHWDKVNTNVDHSMVWDKVDRGSFRADQDLMEALFGYVATNRRSPKGKNPSKDTSASSAKIFLLDPKKSQNIAIVLKSLAVSQDEILDALIDGKGLNADTLEKLVRIAPTEEEQALILEYTGDPARLAAAESYLYHILKAVPSAFKRLSAMLFRLNYDSEILEIKESLQVLELGCKELKNQRIFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVLLNRNGSLSRSSSRSSNNSNENFENYAASNEQREREYTTLGLPVVGGISSEFFNVKKAALIDYNTLVGSISTLSTQILEIQEIVSQCRKGEGGYFVKEMEHFIRNAGEELRSVREEQTRVMQLIKRTTEYYQGGATRGTAENSLQLFVIVKDFMGMVDQVCIEIARNMQKRKTHKASS*	805

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1001	804	PANTHER	FORMIN-RELATED	1	802	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Dod04g1001	804	SMART	it6_source	368	798	IPR015425	-
	Dod04g1001	804	MobiDBLite	consensus disorder prediction	33	52	-	-
	Dod04g1001	804	MobiDBLite	consensus disorder prediction	309	340	-	-
	Dod04g1001	804	MobiDBLite	consensus disorder prediction	33	97	-	-
	Dod04g1001	804	Pfam	Formin Homology 2 Domain	373	783	IPR015425	-
	Dod04g1001	804	Coils	Coil	541	561	-	-
	Dod04g1001	804	MobiDBLite	consensus disorder prediction	255	281	-	-
	Dod04g1001	804	Gene3D	Formin, FH2 domain	375	804	IPR042201	-
	Dod04g1001	804	MobiDBLite	consensus disorder prediction	251	380	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1001	Dod-Chr4	29171408	29174452	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1001	5	799	FH2 protein (formin) Gene Family	AT1G70140	42.543	0.0	570

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1001	-		-	vun:114178801	909.827

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod04g1001	04	29171408	29174452	Dod04g1001	04	29171408	29174452	ECH

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