Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0987 ATGGCAAGGAGTAGCCTGTTACATGTGCTAAAAGGAATGCATCACTTTGGTTTGAACAAGAAGAATATTCCATTATTCACCAACATTACTTGCAACAAATACATTGTAGTGATAAAACACGGGGGCCATACTTGGGAAGTGAAATTCACAAAGTATTGCAACAGGGAACTAGGAATGTTTGGTAAGGGTTGGGGAGAATTTCTTTCAGACATTGACTTGCATGTGACTAATATATGCATCTTTGAGGTCATTGATAAGAACTTACCCAAATTGCAAGTGCATGTGTTTGAATCTGAAGGTGACAATGCACCTACCCTGCATCTGGAAGACTGA 333 0.3934 MARSSLLHVLKGMHHFGLNKKNIPLFTNITCNKYIVVIKHGGHTWEVKFTKYCNRELGMFGKGWGEFLSDIDLHVTNICIFEVIDKNLPKLQVHVFESEGDNAPTLHLED* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0987 110 Pfam B3 DNA binding domain 31 98 IPR003340 GO:0003677
Dod04g0987 110 ProSiteProfiles B3 DNA-binding domain profile. 35 99 IPR003340 GO:0003677
Dod04g0987 110 SUPERFAMILY DNA-binding pseudobarrel domain 27 96 IPR015300 -
Dod04g0987 110 CDD B3_DNA 35 96 IPR003340 GO:0003677
Dod04g0987 110 Gene3D - 8 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0987 Dod-Chr4 28547151 28548036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0987 28 103 REM Transcription Factor Family AT4G33280 26.316 8.28e-06 41.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod04g0987 B3 5.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0987 - - aprc:113871917 63.5438