Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0974 ATGAACAAGTGGTTGCAGGGGTTTCTCCCTACAATGTTCTCAACTAAGTTACGCGTTCCACCTTTTCAAAGGCGATTTTACTGTTCCCCTTCCTCACCTTCTTTCTCTCCTCCTTCCGCCAGCAACAAGCTCTTCGTTGGAGGGTTGTCGTGGTCCGTGGACGAGAAGTCCCTTAAAGACGCTTTCTCTTCCTTCGGAGAAGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGGTCTAGAGGCATTGGATTTGTCATCTTTTCAAGTGAAGATGATGCCAAATGTGCAAAGGATGCAATGGACGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTGGAGAAAGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTGCAGATATTGGACATTTAAAAAGGCACTAA 426 0.4554 MNKWLQGFLPTMFSTKLRVPPFQRRFYCSPSSPSFSPPSASNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRSRGIGFVIFSSEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLADIGHLKRH* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0974 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Dod04g0974 141 PANTHER TRANSFORMER-2-RELATED 23 139 - -
Dod04g0974 141 SMART rrm1_1 43 116 IPR000504 GO:0003723
Dod04g0974 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Dod04g0974 141 SUPERFAMILY RNA-binding domain, RBD 29 123 IPR035979 GO:0003676
Dod04g0974 141 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 23 139 - -
Dod04g0974 141 Gene3D - 24 124 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0974 Dod-Chr4 28260516 28263486 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0974 40 121 C2H2 Transcription Factor Family AT2G19380 39.286 2.48e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0974 - - lang:109361234 211.846