Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0959 ATGGCTGAAGCATCAGTGATCGTGTACACCACCTTCCTTCGTCGTTTCACCTCAACAATCCATAGAACCCATCTGTATCACCACCCTCAGCGTCACCCAACACTCTCACGCAACAAGAAGCAGCAACCACATATTCATTGCTCGGTTTCTTCTGCAAATGGTGCCGCTCAAATCTCTGCGATGACGGAAGCTACTATTCCTTGGGGCTGTGAGATTGATTCGTTAGAAAATGCGTCAGCTCTGGAGCGATGGTTGTCAGAGTCAGGCCTTCCGCCGCAGAAGATGACCATACAGAGAGTGGACGTCGGAGAGAGGGGACTTGTTGCCTTGAAGAATATAAGGAAAGGGGAGAAGCTGCTCTTTGTGCCCCCCTCACTAGTCATAACTGCTGATTCTGAGTGGACCTGCCCGGAAGCTGGGAAAGTATTGAAAAAGAACTTAGTGCCAGATTGGCCATTGCTTGCAACTTATCTCATAAGTGAAGCCAGCTTGATGAAATCTTCAAGATGGAGCAATTATATATCAGCCCTGCCTCGGCAACCTTATTCACTTCTTTACTGGTCGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAAAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCCGATTTGTTCCCTGAAGAGTTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGCATTCTTTTCTCACGCTTGGTTCGGTTACCCTCAATGGATGGAAGGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAAGTGGATACATTTTTGGATTATGATAAGCTGTCAAAGGGGATTGTCTTCACAACAGATAGGCAGTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCGAACGGGGAGCTTCTCTTGTCCTATGGGTTTGTTCCCAGGGAAGGTGCAAATCCTTGTGATTCAGTTGAATTGTCACTATCTCTCAAGAAATCGGATAGATCCTACAAAGAGAAATTAGAACTCTTGAAGAAGTATGGATTATCAGGATCTCAATGTTTTCCTGTACAGATTACTGGTTGGCCTTTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGGAAATTTGAAGAGATGGCTGCTGCAGCATCCAATAAAATTACCACCAAGAAGGATTTAAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGTTGTGAATCTAGTATATCAAAATACAACAATTTCTTACAGGCTAGTGGATCTCTGGATTTGGATGTGACTTCTCCAAAACAGCTCAACCGAAGACTCTTTCTGAAACAACTAGCGGTGGACTTGTGTACTAGCGAGCGAAGGATATTATTTCGTGCTCAATATATACTGCGAAGGAGACTGAGGGATATGAGGGCTGGTGAATTAAGAGCTCTAAAAATCTTTGATGGGTTCCGGAATCTTTTCAAATGA 1527 0.4296 MAEASVIVYTTFLRRFTSTIHRTHLYHHPQRHPTLSRNKKQQPHIHCSVSSANGAAQISAMTEATIPWGCEIDSLENASALERWLSESGLPPQKMTIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITADSEWTCPEAGKVLKKNLVPDWPLLATYLISEASLMKSSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPEELFNIESFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVDTFLDYDKLSKGIVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGANPCDSVELSLSLKKSDRSYKEKLELLKKYGLSGSQCFPVQITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKITTKKDLRYPEIEEQALQFILDSCESSISKYNNFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMRAGELRALKIFDGFRNLFK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0959 508 SUPERFAMILY SET domain 77 325 IPR046341 -
Dod04g0959 508 Gene3D set domain protein methyltransferase, domain 1 27 322 - -
Dod04g0959 508 CDD SET_RBCMT 88 323 IPR044431 GO:0016279|GO:0018022
Dod04g0959 508 SMART set_7 93 315 IPR001214 GO:0005515
Dod04g0959 508 Pfam SET domain 105 309 IPR001214 GO:0005515
Dod04g0959 508 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 339 501 IPR036464 -
Dod04g0959 508 Pfam Rubisco LSMT substrate-binding 342 475 IPR015353 -
Dod04g0959 508 PANTHER - 36 303 - -
Dod04g0959 508 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 303 - -
Dod04g0959 508 PIRSF RMT_SET 1 505 IPR011192 GO:0009507|GO:0030785
Dod04g0959 508 ProSiteProfiles SET domain profile. 93 309 IPR001214 GO:0005515
Dod04g0959 508 Gene3D - 328 497 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0959 Dod-Chr4 27619600 27630195 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod04g0959 SET 9.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0959 - - gmx:100803319 835.099