Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0948 ATGTCGGGTCGAGGTGGAAGGGACCGGATTAGGAGGGATTACCCTTCAAGATACGAAGATAAGGGTGGTGGCAGTGCCACCGGGCGTGGTGGTGGCGCCACCGGGCGTGGCAGCAGCAACAGCAACAACCCTCCATCCAGGCACCTTTGGGTTGGGAACCTGTCCCACAACATTGTGGAGGAGGATGAACTGGCTCATCATTTCTCACAGTTTGGGCCGCTGGAGAGTATCGCGTTCCAGCCGGGCCGCAGCTATGCTTTCGTCAACTTCAAGAGGGACGAGGATGGCATCGATGCCATGAGAGCACTTCAAGGTTTTCCTCTTGCTGGAAACCCGCTTAGGATCGAGTTTGCTAAGGCGGATAAGCCAGCGACAATATCACGTGATGAACATTACTCACGGGATGAACGAAGCTCGGCATTTAGGGGATCTCCTTTCTCTCAAAGGGAGTTTAGAGGACGCCATAGTAGCCCCCCTGAGCCGCTTTATTCTGACAAATCCAAGTTGAGTGATAAAAATCCCGAGCCCAGTGAGATATTGTGGATTGGATTCCCAGCACAGCTGAAGGTGGATGAATTTGTTTTGAGAAAGGCTTTTTCACCATTTGGTGAGATTGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTCGTAGTCTGATGTCAGCATGCAGAGCAAGAGATACTCTTAAAGGAAAATTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAGCAGGTTCATCGAGCAGTGGGAGGAGTTCATTTAATGCCCCTCATTCCCCAATTTATAGGTCAAGTGGTCGCGAAGGATCTTCTGATAACCTTAGGCAGGACAGGGGCTTCATTGGAGACCATAACATTAGTTCTCCAAACTTCTTCCCGAATTGGGTTCATGGAGATTCTGATACTTATGATTTTGACAGAAGGGATTCTTCATGGGCTGGTGGAACAAACACATATGAGCAAAGGAAAGTTGCAGAGAAGGGGACACCACAAGGACTTGGAGTATCACAAGAAATCGATGAATATATGGGTATTCCTTCAGGAGAAAGACATGCTCATCGGGGTGATTTACCACTGAGATTTCCTCAAAAAGGTGCATTCTTTAAAGATCCGCAGTCCTTGCCAGAAGATGTTCACTATCTACGCGAGGCTAAGAAGCTAAGGACTGGTTCTCCTCCTCCTCCTGAGAGAGAGCTTCCAGAGTATCCTTTCTCTGAGTTAGAAAGACAGAAAGGTTTTTTCCCGCGGTTATTGCCTGATTTTTCCCAACGTGAGTCTTTTAATAATGATGCTGGAAATGTTGCCTATAGACAGACCCTTGATCACCCACCAAATTCACCTATGGGTTGTTTAGACAGACGTGAAGGCGGGAGACCTTATGATAGTTTTCAAATGGGTCCAGGTGCTCTGCATTCAAATTTTGTAGAGAAGAAAAGATTTACACCTGAACCTGATCATTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGAGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATCATGTTACCTGAATTCTTGGATTGCACTGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTTTTTGTGCCCGGAAGTGACGCTGACATTGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGGGCAGCAGTTGCCAAGTTGGATGACAAGACCACCTTATTTCTTGTACCTCCTTCAGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGGAAATTGAGCATATCTGGTGTTATTCTAAGGCTGGAGAATCCTGGTTTAAATCACGGTCCTGTACATATTCCAACAGAAATGAGAAACGAGAATCTGTTGACTTATAATGAGAGTATAATGTATTCAAAGCCTTCATTTCCATCAGCAATTTCAGAATTAGGGTAA 2001 0.4548 MSGRGGRDRIRRDYPSRYEDKGGGSATGRGGGATGRGSSNSNNPPSRHLWVGNLSHNIVEEDELAHHFSQFGPLESIAFQPGRSYAFVNFKRDEDGIDAMRALQGFPLAGNPLRIEFAKADKPATISRDEHYSRDERSSAFRGSPFSQREFRGRHSSPPEPLYSDKSKLSDKNPEPSEILWIGFPAQLKVDEFVLRKAFSPFGEIVKITTFPGRSYAFVRFRSLMSACRARDTLKGKLFGNPRVHICFAKSEAGSSSSGRSSFNAPHSPIYRSSGREGSSDNLRQDRGFIGDHNISSPNFFPNWVHGDSDTYDFDRRDSSWAGGTNTYEQRKVAEKGTPQGLGVSQEIDEYMGIPSGERHAHRGDLPLRFPQKGAFFKDPQSLPEDVHYLREAKKLRTGSPPPPERELPEYPFSELERQKGFFPRLLPDFSQRESFNNDAGNVAYRQTLDHPPNSPMGCLDRREGGRPYDSFQMGPGALHSNFVEKKRFTPEPDHSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLENPGLNHGPVHIPTEMRNENLLTYNESIMYSKPSFPSAISELG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0948 666 Pfam SPOC domain 497 611 IPR012921 -
Dod04g0948 666 PANTHER RNA-BINDING PROTEIN SPENITO 31 647 - -
Dod04g0948 666 SUPERFAMILY RNA-binding domain, RBD 189 279 IPR035979 GO:0003676
Dod04g0948 666 MobiDBLite consensus disorder prediction 253 278 - -
Dod04g0948 666 MobiDBLite consensus disorder prediction 126 171 - -
Dod04g0948 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 120 IPR000504 GO:0003723
Dod04g0948 666 PANTHER RNA RECOGNITION MOTIF-CONTAINING 31 647 - -
Dod04g0948 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 243 IPR000504 GO:0003723
Dod04g0948 666 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 113 IPR000504 GO:0003723
Dod04g0948 666 SUPERFAMILY RNA-binding domain, RBD 35 127 IPR035979 GO:0003676
Dod04g0948 666 MobiDBLite consensus disorder prediction 1 19 - -
Dod04g0948 666 Gene3D - 33 126 IPR012677 -
Dod04g0948 666 MobiDBLite consensus disorder prediction 32 49 - -
Dod04g0948 666 MobiDBLite consensus disorder prediction 153 171 - -
Dod04g0948 666 Gene3D - 164 259 IPR012677 -
Dod04g0948 666 MobiDBLite consensus disorder prediction 1 49 - -
Dod04g0948 666 CDD RRM3_Spen 49 119 - -
Dod04g0948 666 MobiDBLite consensus disorder prediction 253 289 - -
Dod04g0948 666 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 251 IPR000504 GO:0003723
Dod04g0948 666 SMART rrm1_1 179 247 IPR000504 GO:0003723
Dod04g0948 666 SMART rrm1_1 48 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0948 Dod-Chr4 27022064 27033774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0948 48 278 Eukaryotic Initiation Factors Gene Family AT2G36660 24.125 9.74e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0948 - - gmx:100816831 969.148