Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0886 ATGGCAGCCTGCTTGAGGCCACCAAGGCTACATAGCAACGAAGATGACTCTGTGGTCATCTTCTCAACTTCTAACTCTCCTGAAGAGTCCATCAGTCCTCCTTCTTCTTTCTACCATTCACCACCACCAGCACTGCATCAATGCAGAACTGCCTACAAACTCTCTGTCAGAAATTTATCCTATACTCTGCACCCAAATAAGACCGTTCCTTTCTCATTCTGTCACCTGACTCGAAAGCCTTATCCTGCAAATATACTCAAGTCTGTCTCCTTTGTTGCCAGAAGTTCTGAGATAGTTGCTGTTGTTGGCCCTAGTGGCACAGGGAAGTCTACTCTACTCCGAATAATCGCTGGCAGGGTAAAAGATAAAGATTTTGATCCCAAAAGCATCACTATCAATGATCAGCCGGTGACTAGTCCAGCACAGTTGAGGAAGATGTGTGGCTTTGTGGCACAGGAGGACAATTTGCTTCCTCTTCTAACAGTGAAAGAGACTTTACTGTTTAGTGCCAAGTTTAGGCTGAAGGAAATGACACCAAAGGACAGAGAAATGAGGGTAGAAGGCTTGATGCATGAGCTAGGCCTTTTTCATGTTGCAGATAGTTTTGTTGGAGATGAAGAGAATAGAGGGATATCTGGTGGAGAGAGGAAAAGGGTATCAATTGGAGTTGATATGATTCACAACCCTCCAATTTTACTCTTAGATGAGCCAACGTCCGGCCTAGACAGCACTTCGGCTCTGCAAGTGATAGAGCTTTTGTCATCAGTGGTTAGAACGAAGCAGAGAACAGTGGTTCTGTCAATCCACCAACCCAGTTATAGAATATTGCAGTATATTTCTAGGTTCCTGGTCCTATTTAATGGTTCAGTGGTTCACAATGGTAGCCTAGAATCGCTTGAGGAAGCCATAAGTAAACTGGGATTTCAAGTTCCAATGCAACTGAATGCTTTAGAATTTTCCATGGAAATTATACGCAGCTTAGAAGATTCCAGTTCCAAACATGACGCTTCCAACACTGAGGAAAAGCAGCCATATCAAAATCCCATCTGGCCAGTGCAAGAAAATGGTGGAGTCCAATCACCGTGTAACAGGGAAAGTTTTGGCACTCTATGTTATTTAAACTTGATTGAGATATTGTTTCTGTGCTCAAGATTTTGGAAAATCATTTATAGGACAAAGCAGCTATTCCTTGCCAGAACAATGCAAGCATTGGTTGGTGGATTTGGGCTGGGAAGTGTTTATGTAAAGGTAAGGAATGATGAAGGAGGGGTAGCAGAGAGGTTAGGTCTGTTTGCATTTAGTCTTAGTTTTCTGCTGTCATCCACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGCGTGTTCTGATGAAAGAAGCCTCAACGGGAGCCTATAGAATTTCCTCTTATATGATAGCCAACACTTTCGTTTTCCTTCCTTTCTTGTTTGTAGTATCTATACTTTTTGCAGTTCCTCTGTATTGGCTTGTAGGGCTCAATCCTTCCCTAGGTGCCTTCAGCTTCTTCACTTTTGTGGTTTGGCTCATTGTTCTTGTGGCGAGTTCTCTAGCACTCTTCTTAAGTGCAGTCTCCCCTGATTTCATTTCTGGGAATTCCCTCATTTGCACGGTCCTTGGAGCCTTCTTCCTCTTCTCCGGATACTTCATCCCAAAGGACAGCATTCCAAAATATTGGCTTTTCATGTACTATGTATCCCTCTATAGATACCCTTTGGATGCACTCCTCACAAATGAGTACTGGAATGTACGAAATGAATGTTTCTCACAAGACACCGAGGGCTCCCAGTGTTTGATTACTGGCTTTGATGTGTTGAAGAGTAGAGGACTTGAAAAGGATAACAGGTGGATGAATGCGGGAGTGATGTTGGGATTCTTTGTGTTCTATCGTGTGCTTTCTTGGGTTATACTTGCCCGAAAGGCCTCTAAGACAACAATATAA 1959 0.4313 MAACLRPPRLHSNEDDSVVIFSTSNSPEESISPPSSFYHSPPPALHQCRTAYKLSVRNLSYTLHPNKTVPFSFCHLTRKPYPANILKSVSFVARSSEIVAVVGPSGTGKSTLLRIIAGRVKDKDFDPKSITINDQPVTSPAQLRKMCGFVAQEDNLLPLLTVKETLLFSAKFRLKEMTPKDREMRVEGLMHELGLFHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSVVRTKQRTVVLSIHQPSYRILQYISRFLVLFNGSVVHNGSLESLEEAISKLGFQVPMQLNALEFSMEIIRSLEDSSSKHDASNTEEKQPYQNPIWPVQENGGVQSPCNRESFGTLCYLNLIEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYVKVRNDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASTGAYRISSYMIANTFVFLPFLFVVSILFAVPLYWLVGLNPSLGAFSFFTFVVWLIVLVASSLALFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKDSIPKYWLFMYYVSLYRYPLDALLTNEYWNVRNECFSQDTEGSQCLITGFDVLKSRGLEKDNRWMNAGVMLGFFVFYRVLSWVILARKASKTTI* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0886 652 SMART AAA_5 95 290 IPR003593 -
Dod04g0886 652 Pfam ABC-2 type transporter 269 337 IPR043926 GO:0140359
Dod04g0886 652 Gene3D - 64 347 IPR027417 -
Dod04g0886 652 Pfam ABC transporter 86 239 IPR003439 GO:0005524
Dod04g0886 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 296 IPR027417 -
Dod04g0886 652 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 312 IPR003439 GO:0005524
Dod04g0886 652 Pfam ABC-2 type transporter 378 586 IPR013525 GO:0016020|GO:0140359
Dod04g0886 652 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524
Dod04g0886 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 645 - -
Dod04g0886 652 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 3 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0886 Dod-Chr4 21111169 21113368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0886 67 338 Calmodulin-binding Proteins AT2G36910 29.310 2.48e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0886 K05681 - gmx:100783883 1070.84