Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0854 ATGGATTCATTTGAGGCAGATGGAAATGGGAATGGGGCATCTTTGCCACCACCACCTCCTGTTCCAGCCAATGTTGTACCAGCTAAGGCAGAAGAGGTGCTGCCTGCCACTGCTGAACCTGTTAAGAAGAAGGTTTCCCTTCTTCCGATAGCCAGACGCGGTCTTGGATCAAAGGGAATGAAGATAAATGTTCAAACCAATCACTTCAAAGTTAATGTTACCAATAACGATGGAAATTTCTTCCATTATAGTGTGGCTTTTACTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTTGGGAGAAAGATAATGGATAGGGTGCAGGATACTTATGGTTCTGAGTTGGATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTCTGTTTACTATAGGCTCTCTTCCTCGTAACAAGCTTGAGTTTGAAGTTGTTCTCGAGGATGTTACATCAAACAGAAACAATGGCAATTGTAGTCCTGACGGTCATGGGGACAATGAAGGTGACAGAAAGAGGATGCGCCGCCCATATCGTGCAAAGAAGTTTAAAGTAGAGATTAGCTATGCTGCAAAAATTCCAATGAATGCTATTGCGAATGCCTTGCGTGGGCAGGAGTCAGAGAACTTCCAAGAAGCCATTAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAACAAGGCTGCCTACTAGTGCGGCAATCGTTCTTTCACAATGATCCGATGAATTTTGCTGATGTTGGAGGTGGTGTACTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTGAACATAGATGTCTCGACTACTATGATAATCCATCCTGGGCCTGTTGTGGACTTCCTAATTGCCAATCAAAATGTGAGAGATCCCTTTCATCTTGACTGGGCAAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAGTTAGCCCATCCAATCAAGAGTACAAAATTATTGGTCTCAGTGAACTTCCATGTAGAGAGCAGACTTTTACTCTGAAGAACAAAGGTGGAACGGATGGTGATGATGGAACAGAAGTGACTGTTTATGATTATTTTGTCAATGTTCGCAAGTTGGAACTTCGCTACTCTGCTGACCTTCCTTGTATCAATGTTGGGAAGCCAAAAAGGCCGACATATTTCCCCATTGAGCTTTGCGAATTGGTGTCCTTGCAACGTTATACAAAAGCTCTGTCCACACTTCAAAGGGCTTCACTGGTGGAGAAGTCCAGGCAGAAGCCACAGGAGAGAATGAAGATTTTGTCTGATGCACTAAAATCCAGCAACTATGGCTCTGAACCTATGCTTCGTAACTGTGGAATTTCTATAAGTACTGGCTTTACTCAAGTGGAGGGTCGTGTATTGCCTTCTCCAAGGTTGAAGTTTGGGAATGGCGAAGAATTCAACCCAAGGAATGGGAGATGGAATTTTAGTAATAAGAAATTTGTGCAGCCAACAAAGATAGAACGATGGGCTTTAGTTAACTTTTCTGCACGCTGTGATGTAAAAGGGGTTGTGAGGGATCTGATTAGAGTTGCAGGAACAAAGGGAATTCTGATGGAAGACCCATTTGATGTATTTGAAGAGAATGGTCAGTTTAGGCGTGCTCCACCTATGGTTAGAGTAGAGAAGATGTTTGAGGATATCCAGTCTAAACTTCCTGGTGTTCCTCAGTTCCTTCTGTGTCTGATTCCTGAGCGCAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTATGGAATCGTTAATCAGTGCATGTGTCCTTTAAGGGTCAATGACCAATTTCTGACTAACGTGCTGATGAAGATCAATGCCAAGCTTGGTGGATTGAATACATTGTTAGGTGTTGAACATTCTCCTGCTCTTCCTGTTGTTTCAAAAGCACCCACGCTTATACTGGGCATGGATGTTTCCCATGGTTCACCAGGGCAGTCTGATATTCCTTCAATTGCAGCGGTGGTCAGCTCAAGACAGTGGCCTCTGATATCAAAGTATAGGGCCTGTGTTCGTACCCAGTCGGCAAAGGTTGAAATGATAGATAATTTGTTCAAGAAAGTCTCTGACAAGGAGGATGAAGGAATTATCAGGGAGCTTTTGCTTGATTTCTATGTTAGTTCTGGGAAGAGAAAACCGGACAATATAATCATATTCAGGGACGGTGTTAGTGAATCGCAGTTCAATCAAGTTTTGAATAAAGAACTTGATCAAATCATTGAGGCATGTAAATTTCTCGATGAAAAGTGGGACCCCAAATTTGTGGTTATTGTCGCTCAGAAGAACCACCACACAAGATTCTTCCAGTCTGGTTCTCCAGATAATGTCCCTCCTGGAACTGTAGTCGATAATAAAATTTGTCACCCAAGAAATTATGACTTTTACCTATGTGCACATGCTGGAATGATAGGTACCAGCAGGCCTACACACTACCATGTTCTCCATGATGAGATTGGTTTTAGTCCTGATGAGATGCAGGAGCTAGTCCATTCTCTATCATATGTGTATCAGCGGAGCACTACTGCCATATCTGTTGTTGCTCCAATATGCTATGCACACTTGGCTGCAACTCAGTTGGGGCAGTTCATGAAATTTGAGGACAAATCTGAGACATCTTCTAGTCATGGTGGACTGAGTGGTGCTGGAGCTGTACCCGTCCCCCAGTTGCCCAAGTTGCAGGACAGTGTTGCAAACACAATGTTCTTTTGTTGA 2745 0.431 MDSFEADGNGNGASLPPPPPVPANVVPAKAEEVLPATAEPVKKKVSLLPIARRGLGSKGMKINVQTNHFKVNVTNNDGNFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQDTYGSELDGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNGNCSPDGHGDNEGDRKRMRRPYRAKKFKVEISYAAKIPMNAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPMNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIHPGPVVDFLIANQNVRDPFHLDWAKAKRTLKNLRIKVSPSNQEYKIIGLSELPCREQTFTLKNKGGTDGDDGTEVTVYDYFVNVRKLELRYSADLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALKSSNYGSEPMLRNCGISISTGFTQVEGRVLPSPRLKFGNGEEFNPRNGRWNFSNKKFVQPTKIERWALVNFSARCDVKGVVRDLIRVAGTKGILMEDPFDVFEENGQFRRAPPMVRVEKMFEDIQSKLPGVPQFLLCLIPERKNCEIYGPWKKKNLADYGIVNQCMCPLRVNDQFLTNVLMKINAKLGGLNTLLGVEHSPALPVVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDKEDEGIIRELLLDFYVSSGKRKPDNIIIFRDGVSESQFNQVLNKELDQIIEACKFLDEKWDPKFVVIVAQKNHHTRFFQSGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLHDEIGFSPDEMQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSGAGAVPVPQLPKLQDSVANTMFFC* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0854 914 CDD PAZ_argonaute_like 282 397 - -
Dod04g0854 914 Pfam Argonaute linker 2 domain 424 470 IPR032472 -
Dod04g0854 914 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
Dod04g0854 914 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 913 - -
Dod04g0854 914 SMART Piwi_a_2 567 875 IPR003165 GO:0003676
Dod04g0854 914 Coils Coil 740 760 - -
Dod04g0854 914 Pfam Piwi domain 568 875 IPR003165 GO:0003676
Dod04g0854 914 SUPERFAMILY PAZ domain 277 438 IPR036085 GO:0005515
Dod04g0854 914 Gene3D - 462 628 - -
Dod04g0854 914 ProSiteProfiles Piwi domain profile. 567 875 IPR003165 GO:0003676
Dod04g0854 914 MobiDBLite consensus disorder prediction 1 24 - -
Dod04g0854 914 Pfam PAZ domain 286 414 IPR003100 GO:0005515
Dod04g0854 914 Gene3D - 634 914 IPR036397 GO:0003676
Dod04g0854 914 SMART DUF1785_2 230 282 IPR014811 -
Dod04g0854 914 ProSiteProfiles PAZ domain profile. 324 398 IPR003100 GO:0005515
Dod04g0854 914 CDD Piwi_ago-like 442 869 IPR045246 -
Dod04g0854 914 Gene3D paz domain 276 402 - -
Dod04g0854 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 913 - -
Dod04g0854 914 Pfam N-terminal domain of argonaute 61 220 IPR032474 -
Dod04g0854 914 Pfam Mid domain of argonaute 477 528 IPR032473 -
Dod04g0854 914 MobiDBLite consensus disorder prediction 153 174 - -
Dod04g0854 914 SUPERFAMILY Ribonuclease H-like 553 873 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0854 Dod-Chr4 18821286 18833340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0854 26 914 Eukaryotic Initiation Factors Gene Family AT1G48410 35.745 3.40e-166 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0854 K11593 - gmx:100820376 1598.18