Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0844 ATGAGTAGTGTGACGAGTGGGGGTGATGGTCGGAAAATGCCCAAGGGTCGCCGCTCATCATCATCAATTGAAGAAGGTAGTGGTGGAAGTAACTTGGGAGGAGAAGGTCCTTTGAAGAAAGGCCCTTGGACATCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAGAAGCATGGAGAGGGAAATTGGAATGCTGTTCAAAGGCATTCAGGACTAGCTCGATGTGGGAAGAGTTGCCGTTTACGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGTGCATTTACCGAAGATGAAGAGCGCCGAATCATTGAGCTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCGGAGTTGCCCGGACGTACAGACAATGAGATTAAGAACTATTGGAATACAAGAATTAAAAGAATGCAACGAGCTGGTCTACCAATCTACCCACCTGATGTATGCCTACGGGTGTTGAGTGGCAATCAAGAAAGTCTCAATGTTGGCAACTTGTCAGATGGAGCCAATCAGCATGATGATCTCTCGCAGACAGACACTTTTGATATTCCGGAATTAGATTTCAGAAATTTCAAACTCCGCCGGGGTCTATCCTATGGACCATCAATTTTTGATATACCTGAAAGCAGCACATTTGAACAAAGTTCAGACTCGTCTCATGGTTATAATATGATGTTCCCAATGATGCATCCTCCAAAGCACCTTCGGGAATCAGATGTGCTATACAACAGTCTGGACAGTTGTATCGGTAGTGCCGTCCCGGCATTTGATCAGTCTGGTGATTACACTTGTGAGAAAATTTCTGACCACACTAGTTTGTCTTCGCCATGTGATCCTATTCTAAACACCAGTGATCAGTTTCACGGTGATGACCTTTATGGCAGCCATGCCACTTTAAATGGCAATACCTCTTCTTCTATGCCCATATCTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTATCTGGGGTACATCTACGTCCCCACTTCCTTCACTTGAGTCTGTTGACACGTTGATTCAGTCTCCTCCCGCAGAGCCTACTCATTCAGATCCTGTTTCTCCACAGAGTAGTGGTTTGCTGGAATCGGTAATCTACCAGCCGAAGCGTATAAAAGGCTCAAATAATAACTCATTGCAGGAGACACCTGATAATTATGTTCCCATTGAAGCAGTCAAGAGTGCAACCTTGAATCTGTGTAAGTCGGAATGGGATGAGCAAGCGGGGCCATATTCCCCCTTTGGTCAGTCTGCTGCTTCAGTTCTTACAGACTATACTCCTATTAGCATGTGCTCAGTGGATGAGCCCCAATCATTCGAAATTACTCAGGATCATGATATTAAGCATGAACTAGGCACACAGTTCCCAGCTTACTGTTCCGGGAAGAATGAAAACTTGAATCAAATAGACTTCACAAGGCCTGATGCTTTACTTGACTTGGGTTGGTTTGGGAATAGCATTGAGTGTGACAAAGATCAATCTGTTCTAAAAGATGCTTTCGACTCATTTCTTGGCGAAGATTGCTGCCACCGTCAGTTCTAG 1578 0.4474 MSSVTSGGDGRKMPKGRRSSSSIEEGSGGSNLGGEGPLKKGPWTSAEDAILVEYVKKHGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLKKGAFTEDEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDVCLRVLSGNQESLNVGNLSDGANQHDDLSQTDTFDIPELDFRNFKLRRGLSYGPSIFDIPESSTFEQSSDSSHGYNMMFPMMHPPKHLRESDVLYNSLDSCIGSAVPAFDQSGDYTCEKISDHTSLSSPCDPILNTSDQFHGDDLYGSHATLNGNTSSSMPISGAMKLELPSLQYLETQQGIWGTSTSPLPSLESVDTLIQSPPAEPTHSDPVSPQSSGLLESVIYQPKRIKGSNNNSLQETPDNYVPIEAVKSATLNLCKSEWDEQAGPYSPFGQSAASVLTDYTPISMCSVDEPQSFEITQDHDIKHELGTQFPAYCSGKNENLNQIDFTRPDALLDLGWFGNSIECDKDQSVLKDAFDSFLGEDCCHRQF* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0844 525 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Dod04g0844 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Dod04g0844 525 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Dod04g0844 525 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 520 - -
Dod04g0844 525 SMART sant 92 140 IPR001005 -
Dod04g0844 525 SMART sant 39 89 IPR001005 -
Dod04g0844 525 CDD SANT 42 87 IPR001005 -
Dod04g0844 525 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 520 - -
Dod04g0844 525 MobiDBLite consensus disorder prediction 1 41 - -
Dod04g0844 525 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Dod04g0844 525 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Dod04g0844 525 CDD SANT 95 136 IPR001005 -
Dod04g0844 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Dod04g0844 525 Gene3D - 95 163 - -
Dod04g0844 525 Gene3D - 39 92 - -
Dod04g0844 525 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0844 Dod-Chr4 18082900 18091979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0844 38 519 MYB Transcription Factor Family AT5G06100 40.530 6.57e-97 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g0844 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0844 K09422 - gmx:100800658 709.138