LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g0843	ATGCAGAAAATGATTCCTTCTCAAAAGAGGCTCGCACGCGAGTGGGAGAACGACACTGCACCACCACCACCACCTCACCTCCAGCAAGCAGTTCAAGGCAACATCAACGGCGGCAGCAGCAGCAGCAACAGCGCTAAAAGGGTTTGTCGGCACTGTAACCGAGAATTCAGCAGCGGAAGAGCTCTAGGAGGCCATATCAGAATCCATAACCAAAACCGGGGAAAGCTTCCCTACGCTCGCCGCAGGGGAGGTAGCGGCGGCGGAAGCAGTAGCAAGAGGAGGAGATACCGCAGGAGAACAGATCCGCGATCTTCTGCGGTGGCAGCCACCGCCGCTAGAAAGATCGGTAGCGGGAAAGAAAGTGGCCGTGGTGCAGATGATGAGTCTAACAAAGAGGTCACTGATTTGTCGCAGGGCTTGTCTGGATCTGGCTGGAAGGTTCACAAAAGGAGGGGCAGCAACAGCAACAACACCAACAACAACAACCAGGAGCAGGAACGGGGACAGCAGCAGCAGCAAATAGTGGTGGTTCGCGAGTGCGATCATGATGATGATGATGATGATGAAGATTCGGATGGTGGAGATGACGACGGGCATTCCTTCGTGATGGAAAGGTTGCGAAGGATTGGGGTCTCTAGCTCTGCTCACCATGTTATCATGACGAGAAGGCGCTACCTTTGCACCGTTTGCGACCAGTACATGGTCACTTTCCATTCCGTGAGTCGTCACGTCCACGAGACCCATCCCTCACCAGGCAATTCTGCTGACAATGGCCCACAACAACAAAAACCACAAGAGGAGGAGAAGCAGGTAGAGGAAGAATCCGAAGAAGAAGAAGAAGAACAGGAGGAGGAGGATCCTCAAGAGGATGACAAGGAAGAGGAAGAAGAAGATGGTGAGAATGACGAAGACGAGGACGAGGGCAAGAACCAGAACCAAAACGAGGAAAGAGGAGGAGAAGAAGGTGCAGAAGAATCCATGGAGGTTGAGGAAGATCTTGATGAGGAGAAGTCAGGAGTTGATCGACATGTTAACGAAGGAGTGGGTGAAGAAGATTCAATGGAAGCGGCTGTTCAAGTTGCTGCTGAGGAGGAGGAAGGCCAACAAGAAGAGGAAGGTGCAAAAGCGGTTACCATGGAAAATGACGAAGCTGCTGCTGACCAAGGGCAAGAGGAAGGAGCAGGCTCAGCCAGTGCAGGTGACAACATTCGTGGCTCCATGGATCAAAATGCTTTGGCTTTGGATCCTCCGAAAAGAATGCGTAATTTTGATCTAAATGAACTGCCTCCACAGGAGCAGGAGGATTGA	1308	0.5199	MQKMIPSQKRLAREWENDTAPPPPPHLQQAVQGNINGGSSSSNSAKRVCRHCNREFSSGRALGGHIRIHNQNRGKLPYARRRGGSGGGSSSKRRRYRRRTDPRSSAVAATAARKIGSGKESGRGADDESNKEVTDLSQGLSGSGWKVHKRRGSNSNNTNNNNQEQERGQQQQQIVVVRECDHDDDDDDEDSDGGDDDGHSFVMERLRRIGVSSSAHHVIMTRRRYLCTVCDQYMVTFHSVSRHVHETHPSPGNSADNGPQQQKPQEEEKQVEEESEEEEEEQEEEDPQEDDKEEEEEDGENDEDEDEGKNQNQNEERGGEEGAEESMEVEEDLDEEKSGVDRHVNEGVGEEDSMEAAVQVAAEEEEGQQEEEGAKAVTMENDEAAADQGQEEGAGSASAGDNIRGSMDQNALALDPPKRMRNFDLNELPPQEQED*	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g0843	435	Coils	Coil	263	286	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	148	176	-	-
	Dod04g0843	435	ProSitePatterns	Zinc finger C2H2 type domain signature.	227	248	IPR013087	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	270	309	-	-
	Dod04g0843	435	SUPERFAMILY	beta-beta-alpha zinc fingers	48	244	IPR036236	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	29	46	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	119	133	-	-
	Dod04g0843	435	ProSitePatterns	Zinc finger C2H2 type domain signature.	49	69	IPR013087	-
	Dod04g0843	435	SMART	c2h2final6	47	69	IPR013087	-
	Dod04g0843	435	SMART	c2h2final6	225	248	IPR013087	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	1	46	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	336	350	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	63	200	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	244	435	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	246	261	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	321	335	-	-
	Dod04g0843	435	MobiDBLite	consensus disorder prediction	181	195	-	-
	Dod04g0843	435	ProSiteProfiles	Zinc finger C2H2 type domain profile.	47	74	IPR013087	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g0843	40	144	C2H2 Transcription Factor Family	AT3G53820	29.907	2.66e-06	45.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Dod04g0843		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g0843	-		-	ccaj:109809633	95.9005