Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0840 ATGCCATGTAACCATATTTACCACTCCGACTGCATTGCTCCTTGGCTAGCTCAGCATAACTCATGCCCTGTCTGTCGTGTTGAGCTGCCACCTCCAGGACGTGCTAGTCCTCCTCCTCGTGGAAGTCGAAGTTTTGGAGGAAGGAATGGCGACAACAGTCCCGACGAAGGGAAGGGAACACCATTTGCTATAGAAGATTTCCATGCTGCTATTCAACCTGACTTACTACAAGAATACAAATTGTCCCAGCTGATGTGCTAG 261 0.4904 MPCNHIYHSDCIAPWLAQHNSCPVCRVELPPPGRASPPPRGSRSFGGRNGDNSPDEGKGTPFAIEDFHAAIQPDLLQEYKLSQLMC* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0840 86 Pfam Ring finger domain 2 26 IPR001841 -
Dod04g0840 86 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 55 - -
Dod04g0840 86 PANTHER OS03G0351800 PROTEIN 1 55 - -
Dod04g0840 86 MobiDBLite consensus disorder prediction 28 62 - -
Dod04g0840 86 SUPERFAMILY RING/U-box 1 33 - -
Dod04g0840 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 37 IPR013083 -
Dod04g0840 86 ProSiteProfiles Zinc finger RING-type profile. 1 26 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0840 Dod-Chr4 17907788 17910959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0840 1 65 C3H Transcription Factor Family AT2G44330 43.077 3.02e-14 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0840 K11982 - zju:107410461 80.1073